Natural selection on the olfactory receptor gene family in humans and chimpanzees

被引:122
作者
Gilad, Y
Bustamante, CD
Lancet, D
Pääbo, S
机构
[1] Max Planck Inst Evolutinary Anthropol, D-04103 Leipzig, Germany
[2] Weizmann Inst Sci, Dept Mol Genet, IL-76100 Rehovot, Israel
[3] Cornell Univ, Dept Biol Stat & Computat Biol, Ithaca, NY USA
关键词
D O I
10.1086/378132
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The olfactory receptor ( OR) genes constitute the largest gene family in mammalian genomes. Humans have 11,000 OR genes, of which only similar to 40% have an intact coding region and are therefore putatively functional. In contrast, the fraction of intact OR genes in the genomes of the great apes is significantly greater (68% - 72%), suggesting that selective pressures on the OR repertoire vary among these species. We have examined the evolutionary forces that shaped the OR gene family in humans and chimpanzees by resequencing 20 OR genes in 16 humans, 16 chimpanzees, and one orangutan. We compared the variation at the OR genes with that at intergenic regions. In both humans and chimpanzees, OR pseudogenes seem to evolve neutrally. In chimpanzees, patterns of variability are consistent with purifying selection acting on intact OR genes, whereas, in humans, there is suggestive evidence for positive selection acting on intact OR genes. These observations are likely due to differences in lifestyle, between humans and great apes, that have led to distinct sensory needs.
引用
收藏
页码:489 / 501
页数:13
相关论文
共 41 条
[1]   OLFACTORY RECEPTOR GENE-CLUSTER ON HUMAN-CHROMOSOME-17 - POSSIBLE DUPLICATION OF AN ANCESTRAL RECEPTOR REPERTOIRE [J].
BENARIE, N ;
LANCET, D ;
TAYLOR, C ;
KHEN, M ;
WALKER, N ;
LEDBETTER, DH ;
CARROZZO, R ;
PATEL, K ;
SHEER, D ;
LEHRACH, H ;
NORTH, MA .
HUMAN MOLECULAR GENETICS, 1994, 3 (02) :229-235
[2]   THE HITCHHIKING EFFECT ON THE SITE FREQUENCY-SPECTRUM OF DNA POLYMORPHISMS [J].
BRAVERMAN, JM ;
HUDSON, RR ;
KAPLAN, NL ;
LANGLEY, CH ;
STEPHAN, W .
GENETICS, 1995, 140 (02) :783-796
[3]   A NOVEL MULTIGENE FAMILY MAY ENCODE ODORANT RECEPTORS - A MOLECULAR-BASIS FOR ODOR RECOGNITION [J].
BUCK, L ;
AXEL, R .
CELL, 1991, 65 (01) :175-187
[4]   The cost of inbreeding in Arabidopsis [J].
Bustamante, CD ;
Nielsen, R ;
Sawyer, SA ;
Olsen, KM ;
Purugganan, MD ;
Hartl, DL .
NATURE, 2002, 416 (6880) :531-534
[5]   Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences [J].
Chen, FC ;
Vallender, EJ ;
Wang, H ;
Tzeng, CS ;
Li, WH .
JOURNAL OF HEREDITY, 2001, 92 (06) :481-489
[6]   Evolution of a HOXB6 intergenic region within the great apes and humans [J].
Deinard, A ;
Kidd, K .
JOURNAL OF HUMAN EVOLUTION, 1999, 36 (06) :687-703
[7]   Genomewide comparison of DNA sequences between humans and chimpanzees [J].
Ebersberger, I ;
Metzler, D ;
Schwarz, C ;
Pääbo, S .
AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 70 (06) :1490-1497
[8]  
EWENS WJ, 1978, AM J HUM GENET, V30, P328
[9]  
Fay JC, 2000, GENETICS, V155, P1405
[10]   Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels [J].
Frisse, L ;
Hudson, RR ;
Bartoszewicz, A ;
Wall, JD ;
Donfack, J ;
Di Rienzo, A .
AMERICAN JOURNAL OF HUMAN GENETICS, 2001, 69 (04) :831-843