共 43 条
Automated molecular microscopy: The new Leginon system
被引:1283
作者:

Suloway, C
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Pulokas, J
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Fellmann, D
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Cheng, A
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Guerra, F
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Quispe, J
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Stagg, S
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Potter, CS
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA

Carragher, B
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, La Jolla, CA 92037 USA
机构:
[1] Scripps Res Inst, La Jolla, CA 92037 USA
关键词:
TEM;
cryo-electron microscopy;
automation;
pipeline;
D O I:
10.1016/j.jsb.2005.03.010
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
We report here on the current state of our efforts in automated molecular microscopy. Our primary automated data acquisition software system, Leginon, has been completely redesigned over the past two years. The new distributed system has been developed using the Python programming language and is compatible with both Linux and Windows operating systems. The new flexible architecture was designed to allow for the development Of Customized data collection protocols, several of which are described here. The system has been used to acquire data for similar to 150 experiments and we have demonstrated the capacity for high throughput data acquisition by acquiring images of more than 100 000 particles in a single session at the microscope. (C) 2005 Elsevier Inc. All rights reserved.
引用
收藏
页码:41 / 60
页数:20
相关论文
共 43 条
[1]
Automation of X-ray crystallography
[J].
Abola, E
;
Kuhn, P
;
Earnest, T
;
Stevens, RC
.
NATURE STRUCTURAL BIOLOGY,
2000, 7 (Suppl 11)
:973-977

Abola, E
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA

Kuhn, P
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA

Earnest, T
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA

Stevens, RC
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA Scripps Res Inst, Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
[2]
A 9 Å single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope
[J].
Booth, CR
;
Jiang, W
;
Baker, ML
;
Zhou, ZH
;
Ludtke, SJ
;
Chiu, W
.
JOURNAL OF STRUCTURAL BIOLOGY,
2004, 147 (02)
:116-127

Booth, CR
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Jiang, W
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Baker, ML
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Zhou, ZH
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Ludtke, SJ
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Chiu, W
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA
[3]
THE CRYSTAL-STRUCTURE OF THE BACTERIAL CHAPERONIN GROEL AT 2.8-ANGSTROM
[J].
BRAIG, K
;
OTWINOWSKI, Z
;
HEGDE, R
;
BOISVERT, DC
;
JOACHIMIAK, A
;
HORWICH, AL
;
SIGLER, PB
.
NATURE,
1994, 371 (6498)
:578-586

BRAIG, K
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510

OTWINOWSKI, Z
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510

HEGDE, R
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510

BOISVERT, DC
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510

JOACHIMIAK, A
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510

HORWICH, AL
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510

SIGLER, PB
论文数: 0 引用数: 0
h-index: 0
机构: YALE UNIV,SCH MED,BOYER CTR,HOWARD HUGHES MED INST,NEW HAVEN,CT 06510
[4]
Rapid, routine structure determination of macromolecular assemblies using electron microscopy: current progress and further challenges
[J].
Carragher, B
;
Fellmann, D
;
Guerra, F
;
Milligan, RA
;
Mouche, F
;
Pulokas, J
;
Sheehan, B
;
Quispe, J
;
Suloway, C
;
Zhu, YX
;
Potter, CS
.
JOURNAL OF SYNCHROTRON RADIATION,
2004, 11
:83-85

Carragher, B
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Fellmann, D
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Guerra, F
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Milligan, RA
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Mouche, F
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Pulokas, J
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Sheehan, B
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Quispe, J
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Suloway, C
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Zhu, YX
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Potter, CS
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA
[5]
Leginon: An automated system for acquisition of images from vitreous ice specimens
[J].
Carragher, B
;
Kisseberth, N
;
Kriegman, D
;
Milligan, RA
;
Potter, CS
;
Pulokas, J
;
Reilein, A
.
JOURNAL OF STRUCTURAL BIOLOGY,
2000, 132 (01)
:33-45

Carragher, B
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Illinois, Beckman Inst, Urbana, IL 61801 USA Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Kisseberth, N
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Kriegman, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Milligan, RA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Potter, CS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Pulokas, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Reilein, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
[6]
Projection structure of full length connexin 43 by electron cryo-crystallography
[J].
Cheng, A
;
Schweissinger, D
;
Dawood, F
;
Kumar, N
;
Yeager, M
.
CELL COMMUNICATION AND ADHESION,
2003, 10 (4-6)
:187-191

Cheng, A
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Schweissinger, D
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Dawood, F
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Kumar, N
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA

Yeager, M
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA
[7]
TOWARDS AUTOMATIC ELECTRON TOMOGRAPHY
[J].
DIERKSEN, K
;
TYPKE, D
;
HEGERL, R
;
KOSTER, AJ
;
BAUMEISTER, W
.
ULTRAMICROSCOPY,
1992, 40 (01)
:71-87

DIERKSEN, K
论文数: 0 引用数: 0
h-index: 0
机构:
MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY

TYPKE, D
论文数: 0 引用数: 0
h-index: 0
机构:
MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY

HEGERL, R
论文数: 0 引用数: 0
h-index: 0
机构:
MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY

KOSTER, AJ
论文数: 0 引用数: 0
h-index: 0
机构:
MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY

BAUMEISTER, W
论文数: 0 引用数: 0
h-index: 0
机构:
MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY MAX PLANCK INST BIOCHEM,W-8033 MARTINSRIED,GERMANY
[8]
A relational database for cryoEM: experience at one year and 50 000 images
[J].
Fellmann, D
;
Pulokas, J
;
Milligan, RA
;
Carragher, B
;
Potter, CS
.
JOURNAL OF STRUCTURAL BIOLOGY,
2002, 137 (03)
:273-282

Fellmann, D
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA

Pulokas, J
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA

Milligan, RA
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA

Carragher, B
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA

Potter, CS
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA Scripps Res Inst, Res Inst, La Jolla, CA 92037 USA
[9]
STUDIES OF INVERTEBRATE FIBRINOGEN .1. PURIFICATION AND CHARACTERIZATION OF FIBRINOGEN FROM SPINY LOBSTER
[J].
FULLER, GM
;
DOOLITTLE, RF
.
BIOCHEMISTRY,
1971, 10 (08)
:1305-+

FULLER, GM
论文数: 0 引用数: 0
h-index: 0

DOOLITTLE, RF
论文数: 0 引用数: 0
h-index: 0
[10]
STUDIES OF INVERTEBRATE FIBRINOGEN .2. TRANSFORMATION OF LOBSTER FIBRINOGEN INTO FIBRIN
[J].
FULLER, GM
;
DOOLITTLE, RF
.
BIOCHEMISTRY,
1971, 10 (08)
:1311-+

FULLER, GM
论文数: 0 引用数: 0
h-index: 0

DOOLITTLE, RF
论文数: 0 引用数: 0
h-index: 0