Technical note:: Recursive algorithm for inbreeding coefficients assuming nonzero inbreeding of unknown parents

被引:59
作者
Aguilar, I. [1 ,2 ]
Misztal, I. [1 ]
机构
[1] Univ Georgia, Dept Anim & Dairy Sci, Athens, GA 30602 USA
[2] Inst Nacl Invest Agropecuaria, Las Brujas, Uruguay
关键词
inbreeding coefficient; unknown parent; recursive algorithm;
D O I
10.3168/jds.2007-0575
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
A recursive algorithm to calculate inbreeding coefficients was modified to account for nonzero inbreeding of unknown parents. The modification was done by changing one part of a recursive formula in which the inbreeding of an animal with at least one unknown parent is not zero and replacing it by the mean inbreeding of all animals born the same year. The algorithm is iterative. Testing involved 17 million US Holsteins. Convergence was reached in 6 rounds. The computing time per round was 4 min, twice as fast as the VanRaden algorithm based on the tabular method. The recursive algorithm is very simple; however, it requires that the recursion takes into account the order of animals. After a simple modification, the algorithm provides a very good approximation of inbreeding when the pedigree is unordered.
引用
收藏
页码:1669 / 1672
页数:4
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