Animal DNA in PCR reagents plagues ancient DNA research

被引:119
作者
Leonard, Jennifer A.
Shanks, Orin
Hofreiter, Michael
Kreuz, Eva
Hodges, Larry
Ream, Walt
Wayne, Robert K.
Fleischer, Robert C.
机构
[1] Uppsala Univ, Dept Evolutionary Biol, S-75236 Uppsala, Sweden
[2] Univ Calif Los Angeles, Dept Ecol & Evolutionary Biol, Los Angeles, CA 90095 USA
[3] Smithsonian Inst, Natl Museum Nat Hist, Genet Program, Dept Vertebrate Zool, Washington, DC 20008 USA
[4] Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA
[5] Max Planck Inst Evolutionary Anthropol, D-04103 Leipzig, Germany
基金
美国国家科学基金会;
关键词
Sus scrofa; Bos taurus; Gallus gallus; deoxynucleoside triphosphates;
D O I
10.1016/j.jas.2006.10.023
中图分类号
Q98 [人类学];
学科分类号
030303 ;
摘要
Molecular archaeology brings the tools of molecular biology to bear on fundamental questions in archaeology, anthropology, evolution, and ecology. Ancient DNA research is becoming widespread as evolutionary biologists and archaeologists discover the power of the polymerase chain reaction (PCR) to amplify DNA from ancient plant and animal remains. However, the extraordinary susceptibility of PCR to contamination by extraneous DNA is not widely appreciated. We report the independent observation of DNA from domestic animals in PCR reagents and ancient samples in four separate laboratories. Since PCR conditions used in ancient DNA analyses are extremely sensitive, very low concentrations of contaminating DNA can cause false positives. Previously unidentified animal DNA in reagents can confound ancient DNA research on certain domestic animals, especially cows, pigs, and chickens. (c) 2006 Elsevier Ltd. All rights reserved.
引用
收藏
页码:1361 / 1366
页数:6
相关论文
共 39 条
[1]   Anthropologists cast doubt on human DNA evidence [J].
Abbott, A .
NATURE, 2003, 423 (6939) :468-468
[2]   Mitochondrial DNA sequences in ancient Australians: Implications for modern human origins [J].
Adcock, GJ ;
Dennis, ES ;
Easteal, S ;
Huttley, GA ;
Jermiin, LS ;
Peacock, WJ ;
Thorne, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (02) :537-542
[3]   Mitochondrial DNA sequence variation and phylogenetic relationships among Iberian pigs and other domestic and wild pig populations [J].
Alves, E ;
Ovilo, C ;
Rodríguez, MC ;
Silió, L .
ANIMAL GENETICS, 2003, 34 (05) :319-324
[4]   SEQUENCE AND ORGANIZATION OF THE HUMAN MITOCHONDRIAL GENOME [J].
ANDERSON, S ;
BANKIER, AT ;
BARRELL, BG ;
DEBRUIJN, MHL ;
COULSON, AR ;
DROUIN, J ;
EPERON, IC ;
NIERLICH, DP ;
ROE, BA ;
SANGER, F ;
SCHREIER, PH ;
SMITH, AJH ;
STADEN, R ;
YOUNG, IG .
NATURE, 1981, 290 (5806) :457-465
[5]   AMPLIFICATION AND SEQUENCING OF DNA FROM A 120-135-MILLION-YEAR-OLD WEEVIL [J].
CANO, RJ ;
POINAR, HN ;
PIENIAZEK, NJ ;
ACRA, A ;
POINAR, GO .
NATURE, 1993, 363 (6429) :536-538
[6]   Phylogeny of the owlet-nightjars (Aves: Aegothelidae) based on mitochondrial DNA sequence [J].
Dumbacher, JP ;
Pratt, TK ;
Fleischer, RC .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2003, 29 (03) :540-549
[7]   Feasibility and utility of microsatellite markers in archaeological cattle remains from a Viking Age settlement in Dublin [J].
Edwards, CJ ;
Connellan, J ;
Wallace, PF ;
Park, SDE ;
McCormick, FM ;
Olsaker, I ;
Eythórsdóttir, E ;
MacHugh, DE ;
Bailey, JF ;
Bradley, DG .
ANIMAL GENETICS, 2003, 34 (06) :410-416
[8]   Assessing ancient DNA studies [J].
Gilbert, MTP ;
Bandelt, HJ ;
Hofreiter, M ;
Barnes, I .
TRENDS IN ECOLOGY & EVOLUTION, 2005, 20 (10) :541-544
[9]   CHLOROPLAST DNA-SEQUENCE FROM A MIOCENE MAGNOLIA SPECIES [J].
GOLENBERG, EM ;
GIANNASI, DE ;
CLEGG, MT ;
SMILEY, CJ ;
DURBIN, M ;
HENDERSON, D ;
ZURAWSKI, G .
NATURE, 1990, 344 (6267) :656-658
[10]   Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe [J].
Götherström, A ;
Anderung, C ;
Hellborg, L ;
Elburg, R ;
Smith, C ;
Bradley, DG ;
Ellegren, H .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 272 (1579) :2345-2350