Measurement of dipolar couplings for methylene and methyl sites in weakly oriented macromolecules and their use in structure determination

被引:116
作者
Ottiger, M
Delaglio, F
Marquardt, JL
Tjandra, N
Bax, A
机构
[1] NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
[2] NCI, Biophys Chem Lab, NIH, Bethesda, MD 20892 USA
关键词
dipolar couplings; molecular alignment; liquid crystal; protein; structure determination; sidechain dynamics; ubiquitin;
D O I
10.1006/jmre.1998.1546
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A simple and effective method is described for simultaneously measuring dipolar couplings for methine, methylene, and methyl groups in weakly oriented macromolecules. The method is a J-modulated 3D version of the well-known [H-1-C-13] CT-HSQC experiment, from which the J and dipolar information are most accurately extracted by using time-domain fitting in the third, constant-time dimension. For CH2-sites, the method generally yields only the sum of the two individual C-13-H-1 couplings. Structure calculations are carried out by minimizing the deviation between the measured sum, and the sum predicted for each methylene on the basis of the structure. For rapidly spinning methyl groups the dipolar contribution to the splitting of the outer C-13 quartet components can be used directly to constrain the orientation of the C-CH3 bond. Measured sidechain dipolar couplings are in good agreement with an ensemble of NMR structures calculated without use of these couplings. (C) 1998 Academic Press.
引用
收藏
页码:365 / 369
页数:5
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