The adult mouse anatomical dictionary: a tool for annotating and integrating data

被引:131
作者
Hayamizu, TF
Mangan, M
Corradi, JP
Kadin, JA
Ringwald, M
机构
[1] Jackson Lab, Bar Harbor, ME 04609 USA
[2] Bristol Myers Squibb Co, Pharmaceut Res Inst, Wallingford, CT 06492 USA
关键词
D O I
10.1186/gb-2005-6-3-r29
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 [微生物学]; 0836 [生物工程]; 090102 [作物遗传育种]; 100705 [微生物与生化药学];
摘要
We have developed an ontology to provide standardized nomenclature for anatomical terms in the postnatal mouse. The Adult Mouse Anatomical Dictionary is structured as a directed acyclic graph, and is organized hierarchically both spatially and functionally. The ontology will be used to annotate and integrate different types of data pertinent to anatomy, such as gene expression patterns and phenotype information, which will contribute to an integrated description of biological phenomena in the mouse.
引用
收藏
页数:8
相关论文
共 37 条
[1]
EMAP and EMAGE - A framework for understanding spatially organized data [J].
Baldock, RA ;
Bard, JBL ;
Burger, A ;
Burton, N ;
Christiansen, J ;
Feng, GJ ;
Hill, B ;
Houghton, D ;
Kaufman, M ;
Rao, JG ;
Sharpe, J ;
Ross, A ;
Stevenson, P ;
Venkataraman, S ;
Waterhouse, A ;
Yang, Y ;
Davidson, DR .
NEUROINFORMATICS, 2003, 1 (04) :309-325
[2]
An ontology for cell types [J].
Bard, J ;
Rhee, SY ;
Ashburner, M .
GENOME BIOLOGY, 2005, 6 (02)
[3]
An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature [J].
Bard, JBL ;
Kaufman, MH ;
Dubreuil, C ;
Brune, RM ;
Burger, A ;
Baldock, RA ;
Davidson, DR .
MECHANISMS OF DEVELOPMENT, 1998, 74 (1-2) :111-120
[4]
BARD JBL, 1999, ANATOMICAL BASIS MOU
[5]
Cook M.J., 1965, ANATOMY LAB MOUSE
[6]
FAWCETT DW, 1994, BLOOM FAWCETT TXB HI
[7]
Franklin K. B., 1996, MOUSE BRAIN STEREOTA
[8]
Getty R.G., 1975, SISSON GROSSMANS ANA, V1
[9]
Using ontologies to describe mouse phenotypes [J].
Georgios V Gkoutos ;
Eain CJ Green ;
Ann-Marie Mallon ;
John M Hancock ;
Duncan Davidson .
Genome Biology, 6 (1)
[10]
Gray H, 1995, GRAYS ANATOMY ANATOM