The presence of a pseudogene may affect the use of HPRT as an endogenous mRNA control in RT-PCR

被引:28
作者
Sellner, LN
Turbett, GR
机构
[1] Department of Pathology, Royal Perth Hospital, Perth, WA 6000, Wellington St.
关键词
semi-quantitative; RT-PCR; HPRT; pseudogene;
D O I
10.1006/mcpr.1996.0068
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Semi-quantitative reverse-transcription polymerase chain reaction (RT-PCR) has been used extensively as a tool to measure expression levels of mRNA species. Many commonly used endogenous mRNA control species are known to have genomic pseudogenes, which can confound RT-PCR results if not accounted for. The hypoxanthine phosphoribosyltransferase gene (HPRT) has previously been used as an mRNA control to circumvent these difficulties, since it was believed that no pseudogenes existed. The existence of a pseudogene of HPRT is reported, and researchers are warned that this gene cannot be used as an endogenous mRNA control without taking appropriate precautions. (C) 1996 Academic Press Limited
引用
收藏
页码:481 / 483
页数:3
相关论文
共 17 条
[1]   FAST AND SENSITIVE SILVER STAINING OF DNA IN POLYACRYLAMIDE GELS [J].
BASSAM, BJ ;
CAETANOANOLLES, G ;
GRESSHOFF, PM .
ANALYTICAL BIOCHEMISTRY, 1991, 196 (01) :80-83
[2]   INTRONLESS HUMAN DIHYDROFOLATE-REDUCTASE GENES ARE DERIVED FROM PROCESSED RNA MOLECULES [J].
CHEN, MJ ;
SHIMADA, T ;
MOULTON, AD ;
HARRISON, M ;
NIENHUIS, AW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1982, 79 (23) :7435-7439
[3]   SINGLE-STEP METHOD OF RNA ISOLATION BY ACID GUANIDINIUM THIOCYANATE PHENOL CHLOROFORM EXTRACTION [J].
CHOMCZYNSKI, P ;
SACCHI, N .
ANALYTICAL BIOCHEMISTRY, 1987, 162 (01) :156-159
[4]   CYTOKINE GENE-TRANSCRIPTION IN VASCULARIZED ORGAN GRAFTS - ANALYSIS USING SEMIQUANTITATIVE POLYMERASE CHAIN-REACTION [J].
DALLMAN, MJ ;
LARSEN, CP ;
MORRIS, PJ .
JOURNAL OF EXPERIMENTAL MEDICINE, 1991, 174 (02) :493-496
[5]   HUMAN BETA-ACTIN RETROPSEUDOGENES INTERFERE WITH RT-PCR [J].
DIRNHOFER, S ;
BERGER, C ;
UNTERGASSER, G ;
GELEY, S ;
BERGER, P .
TRENDS IN GENETICS, 1995, 11 (10) :380-381
[6]   EFFECTS OF FIXATIVE AND FIXATION TIME ON THE EXTRACTION AND POLYMERASE CHAIN-REACTION AMPLIFICATION OF RNA FROM PARAFFIN-EMBEDDED TISSUE - COMPARISON OF 2 HOUSEKEEPING GENE MESSENGER-RNA CONTROLS [J].
FOSS, RD ;
GUHATHAKURTA, N ;
CONRAN, RM ;
GUTMAN, P .
DIAGNOSTIC MOLECULAR PATHOLOGY, 1994, 3 (03) :148-155
[7]   THE ORGANIZATION OF THE HUMAN HPRT GENE [J].
KIM, SH ;
MOORES, JC ;
DAVID, D ;
RESPESS, JG ;
JOLLY, DJ ;
FRIEDMANN, T .
NUCLEIC ACIDS RESEARCH, 1986, 14 (07) :3103-3118
[8]   MOLECULAR-CLONING AND CHARACTERIZATION OF MUTANT AND WILD-TYPE HUMAN BETA-ACTIN GENES [J].
LEAVITT, J ;
GUNNING, P ;
PORRECA, P ;
NG, SY ;
LIN, CS ;
KEDES, L .
MOLECULAR AND CELLULAR BIOLOGY, 1984, 4 (10) :1961-1969
[9]  
Menon R S, 1991, PCR Methods Appl, V1, P70
[10]   STRUCTURE OF 2 HUMAN BETA-ACTIN-RELATED PROCESSED GENES ONE OF WHICH IS LOCATED NEXT TO A SIMPLE REPETITIVE SEQUENCE [J].
MOOS, M ;
GALLWITZ, D .
EMBO JOURNAL, 1983, 2 (05) :757-761