Microbiota and Host Nutrition across Plant and Animal Kingdoms

被引:516
作者
Hacquard, Stephane [1 ]
Garrido-Oter, Ruben [1 ,2 ,3 ]
Gonzalez, Antonio [4 ]
Spaepen, Stijn [1 ]
Ackermann, Gail [4 ]
Lebeis, Sarah [5 ]
McHardy, Alice C. [2 ,3 ,6 ]
Dangl, Jeffrey L. [7 ,8 ,9 ]
Knight, Rob [4 ,10 ]
Ley, Ruth [11 ,12 ]
Schulze-Lefert, Paul [1 ,3 ]
机构
[1] Max Planck Inst Plant Breeding Res, Dept Plant Microbe Interact, D-50829 Cologne, Germany
[2] Univ Dusseldorf, Dept Algorithm Bioinformat, D-40225 Dusseldorf, Germany
[3] Max Planck Inst Plant Breeding Res, Cluster Excellence Plant Sci CEPLAS, D-50829 Cologne, Germany
[4] Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
[5] Univ Tennessee, Dept Microbiol, Knoxville, TN 37996 USA
[6] Helmholtz Ctr Infect Res, Computat Biol Infect Res, D-38124 Braunschweig, Germany
[7] Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USA
[8] Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA
[9] Univ N Carolina, Curriculum Genet & Mol Biol, Chapel Hill, NC 27599 USA
[10] Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USA
[11] Cornell Univ, Dept Mol Biol & Genet, Ithaca, NY 14853 USA
[12] Cornell Univ, Dept Microbiol, Ithaca, NY 14853 USA
基金
欧洲研究理事会; 比利时弗兰德研究基金会;
关键词
BACTERIAL COMMUNITY STRUCTURE; GUT MICROBIOTA; RHIZOSPHERE MICROBIOME; ROOT MICROBIOTA; DIVERSITY; EVOLUTION; SUCCESSION; SELECTION; PATTERNS; DIET;
D O I
10.1016/j.chom.2015.04.009
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Plants and animals each have evolved specialized organs dedicated to nutrient acquisition, and these harbor specific bacterial communities that extend the host's metabolic repertoire. Similar forces driving microbial community establishment in the gut and plant roots include diet/soil-type, host genotype, and immune system as well as microbe-microbe interactions. Here we show that there is no overlap of abundant bacterial taxa between the microbiotas of the mammalian gut and plant roots, whereas taxa overlap does exist between fish gut and plant root communities. A comparison of root and gut microbiota composition in multiple host species belonging to the same evolutionary lineage reveals host phylogenetic signals in both eukaryotic kingdoms. The reasons underlying striking differences in microbiota composition in independently evolved, yet functionally related, organs in plants and animals remain unclear but might include differences in start inoculum and niche-specific factors such as oxygen levels, temperature, pH, and organic carbon availability.
引用
收藏
页码:603 / 616
页数:14
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