SCATPLOT: A computer program for determination of binding parameters of nonlinear non-cooperative ligand-substrate interactions

被引:25
作者
Ray, A [1 ]
Maiti, M [1 ]
Nandy, A [1 ]
机构
[1] INDIAN INST CHEM BIOL,CALCUTTA 700032,W BENGAL,INDIA
关键词
ligand-substrate interaction; Scatchard plot; least square fit; Turbo BASIC; McGhee vonHippel equation;
D O I
10.1016/S0010-4825(96)00034-0
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The importance of computer-assisted analysis of a non-linear binding phenomenon through Scatchard equation has been widely acknowledged. While several user-friendly softwares [LIGAND, SCTFIT, ALLFIT] are available for determining the binding parameters of nonlinear Scatchard phenomenon, there is no easily available software covering the class of phenomena described by the McGhee and von Hippel formalism [J. Mel. Biol. 86, 469-489 (1974)]. We report here user-friendly software, SCATPLOT, developed in Turbo BASIC, for the numerical estimation of binding parameters of a non-cooperative ligand-substrate interaction doing best fit to the experimental data on the basis of McGhee and von Hippel equation for a nonlinear Scatchard plot. A new parameter has also been incorporated to guide the process of least square analysis and subsequent determination of binding parameters. Copyright (C) 1996 Elsevier Science Ltd.
引用
收藏
页码:497 / 503
页数:7
相关论文
共 27 条
[1]   INTERACTION OF CHLORPROMAZINE WITH MYOGLOBIN AND HEMOGLOBIN - A COMPARATIVE-STUDY [J].
BHATTACHARYYA, J ;
BHATTACHARYYA, M ;
CHAKRABARTY, AS ;
CHAUDHURI, U ;
PODDAR, RK .
BIOCHEMICAL PHARMACOLOGY, 1994, 47 (11) :2049-2053
[2]   QUANTITATIVE-EVALUATION OF ELECTROSTATIC AND HYDROGEN-BONDING CONTRIBUTIONS TO METAL COFACTOR BINDING TO NUCLEIC-ACIDS [J].
BLACK, CB ;
COWAN, JA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (04) :1174-1178
[4]  
CHAIRES JB, 1986, J BIOL CHEM, V261, P8899
[5]  
CHARABORTY S, 1990, BIOCHEM PHARMACOL, V39, P1181
[6]   CALCULATION OF BINDING ISOTHERMS FOR HETEROGENEOUS POLYMERS [J].
CROTHERS, DM .
BIOPOLYMERS, 1968, 6 (04) :575-&
[7]  
CULVO JC, 1994, COMPUT BIOL MED, V24, P205
[8]   INTERACTION OF NETROPSIN AND DISTAMYCIN WITH DEOXYRIBONUCLEIC-ACID - ELECTRIC DICHROISM STUDY [J].
DATTAGUPTA, N ;
HOGAN, M ;
CROTHERS, DM .
BIOCHEMISTRY, 1980, 19 (26) :5998-6005
[9]   MATHEMATICAL THEORY OF CROSS-REACTIVE RADIOIMMUNOASSAY AND LIGAND-BINDING SYSTEMS AT EQUILIBRIUM [J].
FELDMAN, H ;
RODBARD, D ;
LEVINE, D .
ANALYTICAL BIOCHEMISTRY, 1972, 45 (02) :530-+