A common periodic table of codons and amino acids

被引:41
作者
Biro, JC [1 ]
Benyó, B
Sansom, C
Szlávecz, A
Fördös, G
Micsik, T
Benyó, Z
机构
[1] Karolinska Inst, Stockholm, Sweden
[2] Holulus Informat, San Francisco, CA 94105 USA
[3] Szechenyi Istvan Univ, Dept Informat, H-9026 Gyor, Hungary
[4] Univ London Birkbeck Coll, Dept Crystallog, London WC1E 7HX, England
[5] Budapest Univ Technol & Econ, Dept Control Engn & Informat Technol, H-1117 Budapest, Hungary
关键词
nucleic acid; codon; translation; amino acid; protein; periodic table; polarity; charge; hydrophobicity; genetic code;
D O I
10.1016/S0006-291X(03)00974-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A periodic table of codons has been designed where the codons are in regular locations. The table has four fields (16 places in each) one with each of the four nucleotides (A, U, G, C) in the central codon position. Thus, AAA (lysine), UUU (phenylalanine), GGG (glycine), and CCC (proline) were placed into the corners of the fields as the main codons (and amino acids) of the fields. They were connected to each other by six axes. The resulting nucleic acid periodic table showed perfect axial symmetry for codons. The corresponding amino acid table also displaced periodicity regarding the biochemical properties (charge and hydropathy) of the 20 amino acids and the position of the stop signals. The table emphasizes the importance of the central nucleotide in the codons and predicts that purines control the charge while pyrimidines determine the polarity of the amino acids. This prediction was experimentally tested. (C) 2003 Elsevier Science (USA). All rights reserved.
引用
收藏
页码:408 / 415
页数:8
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