Cloud computing and the DNA data race

被引:159
作者
Schatz, Michael C. [1 ]
Langmead, Ben [2 ]
Salzberg, Steven L. [1 ]
机构
[1] Univ Maryland, Ctr Bioinformat & Computat Biol, College Pk, MD 20742 USA
[2] Johns Hopkins Bloomberg Sch Publ Hlth, Dept Biostat, Baltimore, MD USA
基金
美国国家科学基金会;
关键词
GENOME; STANDARD;
D O I
10.1038/nbt0710-691
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Given the accumulation of DNA sequence data sets at ever-faster rates, what are the key factors you should consider when using distributed and multicore computing systems for analysis?
引用
收藏
页码:691 / 693
页数:3
相关论文
共 23 条
[1]  
*AM COM, NETFL SEL AM WEB SER
[2]  
[Anonymous], 1965, ELECTRONICS
[3]  
BRADSKI G., 2007, NIPS, P281
[4]   The anatomy of a large-scale hypertextual Web search engine [J].
Brin, S ;
Page, L .
COMPUTER NETWORKS AND ISDN SYSTEMS, 1998, 30 (1-7) :107-117
[5]   OpenMP: An industry standard API for shared-memory programming [J].
Dagum, L ;
Menon, R .
IEEE COMPUTATIONAL SCIENCE & ENGINEERING, 1998, 5 (01) :46-55
[6]   Mapreduce: Simplified data processing on large clusters [J].
Dean, Jeffrey ;
Ghemawat, Sanjay .
COMMUNICATIONS OF THE ACM, 2008, 51 (01) :107-113
[7]   A message passing standard for MPP and workstations [J].
Dongarra, JJ ;
Otto, SW ;
Snir, M ;
Walker, D .
COMMUNICATIONS OF THE ACM, 1996, 39 (07) :84-90
[8]  
FOLEY J, 2009, PLUG CLOUD 0114
[9]   Galaxy: A platform for interactive large-scale genome analysis [J].
Giardine, B ;
Riemer, C ;
Hardison, RC ;
Burhans, R ;
Elnitski, L ;
Shah, P ;
Zhang, Y ;
Blankenberg, D ;
Albert, I ;
Taylor, J ;
Miller, W ;
Kent, WJ ;
Nekrutenko, A .
GENOME RESEARCH, 2005, 15 (10) :1451-1455
[10]  
*HARV MED SCH, AWS CASE STUD