Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea

被引:186
作者
Bengtsson, Mia M. [1 ]
Ovreas, Lise [1 ]
机构
[1] Univ Bergen, Dept Biol, N-5020 Bergen, Norway
来源
BMC MICROBIOLOGY | 2010年 / 10卷
关键词
RNA-TARGETED PROBES; GIANT TIGER PRAWN; PHYLOGENETIC DIVERSITY; BACTERIAL COMMUNITIES; PENAEUS-MONODON; SEQUENCE DATA; MARINE; IDENTIFICATION; PIRELLULA; ARB;
D O I
10.1186/1471-2180-10-261
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Background: Bacteria belonging to Planctomycetes display several unique morphological and genetic features and are found in a wide variety of habitats on earth. Their ecological roles in these habitats are still poorly understood. Planctomycetes have previously been detected throughout the year on surfaces of the kelp Laminaria hyperborea from southwestern Norway. We aimed to make a detailed investigation of the abundance and phylogenetic diversity of planctomycetes inhabiting these kelp surfaces. Results: Planctomycetes accounted for 51-53% of the bacterial biofilm cells in July and September and 24% in February according to fluorescence in situ hybridization (FISH) results. Several separate planctomycetes lineages within Pirellulae, Planctomyces and OM190 were represented in 16S rRNA gene clone libraries and the most abundant clones belonged to yet uncultured lineages. In contrast to the abundance, the diversity of the planctomycete populations increased from July to February and was probably influenced by the aging of the kelp tissue. One planctomycete strain that was closely related to Rhodopirellula baltica was isolated using selective cultivation techniques. Conclusions: Biofilms on surfaces of L. hyperborea display an even higher proportion of planctomycetes compared to other investigated planctomycete-rich habitats such as open water, sandy sediments and peat bogs. The findings agree well with the hypothesis of the role of planctomycetes as degraders of sulfated polymeric carbon in the marine environment as kelps produce such substances. In addition, the abundant planctomycete populations on kelp surfaces and in association with other eukaryotes suggest that coexistence with eukaryotes may be a key feature of many planctomycete lifestyles.
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页数:12
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共 47 条
[1]   Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter [J].
Bauer, Margarete ;
Kube, Michael ;
Teeling, Hanno ;
Richter, Michael ;
Lombardot, Thierry ;
Allers, Elke ;
Wuerdemann, Chris A. ;
Quast, Christian ;
Kuhl, Heiner ;
Knaust, Florian ;
Woebken, Dagmar ;
Bischof, Kerstin ;
Mussmann, Marc ;
Choudhuri, Jomuna V. ;
Meyer, Folker ;
Reinhardt, Richard ;
Amann, Rudolf I. ;
Gloeckner, Frank Oliver .
ENVIRONMENTAL MICROBIOLOGY, 2006, 8 (12) :2201-2213
[2]   Seasonal dynamics of bacterial biofilms on the kelp Laminaria hyperborea [J].
Bengtsson, Mia M. ;
Sjotun, Kjersti ;
Ovreas, Lise .
AQUATIC MICROBIAL ECOLOGY, 2010, 60 (01) :71-83
[3]   Exploitation of marine algae: biogenic compounds for potential antifouling applications [J].
Bhadury, P ;
Wright, PC .
PLANTA, 2004, 219 (04) :561-578
[4]   The domain-specific probe EUB338 is insufficient for the detection of all Bacteria:: Development and evaluation of a more comprehensive probe set [J].
Daims, H ;
Brühl, A ;
Amann, R ;
Schleifer, KH ;
Wagner, M .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 1999, 22 (03) :434-444
[5]   PHYLOGENETIC DIVERSITY OF AGGREGATE-ATTACHED VS FREE-LIVING MARINE BACTERIAL ASSEMBLAGES [J].
DELONG, EF ;
FRANKS, DG ;
ALLDREDGE, AL .
LIMNOLOGY AND OCEANOGRAPHY, 1993, 38 (05) :924-934
[6]   Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB [J].
DeSantis, T. Z. ;
Hugenholtz, P. ;
Larsen, N. ;
Rojas, M. ;
Brodie, E. L. ;
Keller, K. ;
Huber, T. ;
Dalevi, D. ;
Hu, P. ;
Andersen, G. L. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (07) :5069-5072
[7]   ISOLATION AND DIRECT COMPLETE NUCLEOTIDE DETERMINATION OF ENTIRE GENES - CHARACTERIZATION OF A GENE CODING FOR 16S-RIBOSOMAL RNA [J].
EDWARDS, U ;
ROGALL, T ;
BLOCKER, H ;
EMDE, M ;
BOTTGER, EC .
NUCLEIC ACIDS RESEARCH, 1989, 17 (19) :7843-7853
[8]   Novelty and uniqueness patterns of rare members of the soil biosphere [J].
Elshahed, Mostafa S. ;
Youssef, Noha H. ;
Spain, Anne M. ;
Sheik, Cody ;
Najar, Fares Z. ;
Sukharnikov, Leonid O. ;
Roe, Bruce A. ;
Davis, James P. ;
Schloss, Patrick D. ;
Bailey, Vanessa L. ;
Krumholz, Lee R. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (17) :5422-5428
[9]   SULFATED POLYSACCHARIDE SYNTHESIS IN BROWN ALGAE [J].
EVANS, LV ;
SIMPSON, M ;
CALLOW, ME .
PLANTA, 1973, 110 (03) :237-252
[10]   Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].
Ewing, B ;
Hillier, L ;
Wendl, MC ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :175-185