A structural variation for MurB:: X-ray crystal structure of Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (MurB)

被引:52
作者
Benson, TE
Harris, MS
Choi, GH
Cialdella, JI
Herberg, JT
Martin, JP
Baldwin, ET
机构
[1] Pharmacia Corp, Struct Analyt & Med Chem Biol & Prot Sci, Kalamazoo, MI 49007 USA
[2] Human Genome Sci Inc, Mol Biol, Rockville, MD 20850 USA
关键词
D O I
10.1021/bi002162d
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The X-ray crystal structure of the substrate free form of Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (MurB) has been solved to 2.3 Angstrom resolution with an R-factor of 20.3% and a free R-factor of 22.3%. While the overall fold of the S. aureus enzyme is similar to that of the homologous Escherichia coli MurB X-ray crystal structure, notable distinctions between the S. aureus and E. coli MurB protein structures occur in residues involved in substrate binding. Analysis of available MurB sequences from other bacteria suggest that the S. aureus MurB structure is representative of a distinct structural class of UDP-N-acetylenolpyruvylglucosamine reductases including Bacillus subtilis and Helicobacter pylori that are characterized by a modified mechanism for substrate binding.
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收藏
页码:2340 / 2350
页数:11
相关论文
共 55 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   AN ENZYME-SUBSTRATE COMPLEX INVOLVED IN BACTERIAL-CELL WALL BIOSYNTHESIS [J].
BENSON, TE ;
FILMAN, DJ ;
WALSH, CT ;
HOGLE, JM .
NATURE STRUCTURAL BIOLOGY, 1995, 2 (08) :644-653
[3]   X-ray crystal structures of the S229A mutant and wild-type MurB in the presence of the substrate enolpyruvyl-UDP-N-acetylglucosamine at 1.8-angstrom resolution [J].
Benson, TE ;
Walsh, CT ;
Hogle, JM .
BIOCHEMISTRY, 1997, 36 (04) :806-811
[4]   The structure of the substrate-free form of MurB, an essential enzyme for the synthesis of bacterial cell walls [J].
Benson, TE ;
Walsh, CT ;
Hogle, JM .
STRUCTURE, 1996, 4 (01) :47-54
[5]   OVEREXPRESSION, PURIFICATION, AND MECHANISTIC STUDY OF UDP-N-ACETYLENOLPYRUVYLGLUCOSAMINE REDUCTASE [J].
BENSON, TE ;
MARQUARDT, JL ;
MARQUARDT, AC ;
ETZKORN, FA ;
WALSH, CT .
BIOCHEMISTRY, 1993, 32 (08) :2024-2030
[6]   Kinetic characterization of wild-type and S229A mutant MurB: Evidence for the role of ser 229 as a general acid [J].
Benson, TE ;
Walsh, CT ;
Massey, V .
BIOCHEMISTRY, 1997, 36 (04) :796-805
[7]   Crystal structure of UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase from Escherichia coli [J].
Bertrand, JA ;
Auger, G ;
Fanchon, E ;
Martin, L ;
Blanot, D ;
vanHeijenoort, J ;
Dideberg, O .
EMBO JOURNAL, 1997, 16 (12) :3416-3425
[8]   MURA (MURZ), THE ENZYME THAT CATALYZES THE FIRST COMMITTED STEP IN PEPTIDOGLYCAN BIOSYNTHESIS, IS ESSENTIAL IN ESCHERICHIA-COLI [J].
BROWN, ED ;
VIVAS, EI ;
WALSH, CT ;
KOLTER, R .
JOURNAL OF BACTERIOLOGY, 1995, 177 (14) :4194-4197
[9]  
Brunger A T, 1996, Methods Mol Biol, V56, P245
[10]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475