共 101 条
Mapping protein post-translational modifications with mass spectrometry
被引:601
作者:

Witze, Eric S.
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机构: Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA

Old, William M.
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机构: Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA

Resing, Katheryn A.
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机构: Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA

Ahn, Natalie G.
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机构: Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
机构:
[1] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
[2] Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
关键词:
D O I:
10.1038/nmeth1100
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Post-translational modifications of proteins control many biological processes, and examining their diversity is critical for understanding mechanisms of cell regulation. Mass spectrometry is a fundamental tool for detecting and mapping covalent modifications and quantifying their changes. Modern approaches have made large-scale experiments possible, screening complex mixtures of proteins for alterations in chemical modifications. By profiling protein chemistries, biologists can gain deeper insight into biological control. The aim of this review is introduce biologists to current strategies in mass spectrometry based proteomics that are used to characterize protein post-translational modifications, noting strengths and shortcomings of various approaches.
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页码:798 / 806
页数:9
相关论文
共 101 条
[1]
Mass spectrometry-based proteomics
[J].
Aebersold, R
;
Mann, M
.
NATURE,
2003, 422 (6928)
:198-207

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA

Mann, M
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA
[2]
ISOLATION OF PHOSPHOPROTEINS BY IMMOBILIZED METAL (FE-3+) AFFINITY-CHROMATOGRAPHY
[J].
ANDERSSON, L
;
PORATH, J
.
ANALYTICAL BIOCHEMISTRY,
1986, 154 (01)
:250-254

ANDERSSON, L
论文数: 0 引用数: 0
h-index: 0

PORATH, J
论文数: 0 引用数: 0
h-index: 0
[3]
Inhibition of protein-tyrosine phosphatases by mild oxidative stresses is dependent on S-nitrosylation
[J].
Barrett, DM
;
Black, SM
;
Todor, H
;
Schmidt-Ullrich, RK
;
Dawson, KS
;
Mikkelsen, RB
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2005, 280 (15)
:14453-14461

Barrett, DM
论文数: 0 引用数: 0
h-index: 0
机构: Virginia Commonwealth Univ, Dept Radiat Oncol, Richmond, VA 23298 USA

Black, SM
论文数: 0 引用数: 0
h-index: 0
机构: Virginia Commonwealth Univ, Dept Radiat Oncol, Richmond, VA 23298 USA

Todor, H
论文数: 0 引用数: 0
h-index: 0
机构: Virginia Commonwealth Univ, Dept Radiat Oncol, Richmond, VA 23298 USA

Schmidt-Ullrich, RK
论文数: 0 引用数: 0
h-index: 0
机构: Virginia Commonwealth Univ, Dept Radiat Oncol, Richmond, VA 23298 USA

Dawson, KS
论文数: 0 引用数: 0
h-index: 0
机构: Virginia Commonwealth Univ, Dept Radiat Oncol, Richmond, VA 23298 USA

Mikkelsen, RB
论文数: 0 引用数: 0
h-index: 0
机构: Virginia Commonwealth Univ, Dept Radiat Oncol, Richmond, VA 23298 USA
[4]
Large-scale characterization of HeLa cell nuclear phosphoproteins
[J].
Beausoleil, SA
;
Jedrychowski, M
;
Schwartz, D
;
Elias, JE
;
Villén, J
;
Li, JX
;
Cohn, MA
;
Cantley, LC
;
Gygi, SP
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2004, 101 (33)
:12130-12135

Beausoleil, SA
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Jedrychowski, M
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Schwartz, D
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Elias, JE
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Villén, J
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Li, JX
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Cohn, MA
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Cantley, LC
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Gygi, SP
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA
[5]
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
[J].
Beausoleil, Sean A.
;
Villen, Judit
;
Gerber, Scott A.
;
Rush, John
;
Gygi, Steven P.
.
NATURE BIOTECHNOLOGY,
2006, 24 (10)
:1285-1292

Beausoleil, Sean A.
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA

Villen, Judit
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA

Gerber, Scott A.
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA

Rush, John
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA

Gygi, Steven P.
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA
[6]
Metabolic labeling of proteins for proteomics
[J].
Beynon, RJ
;
Pratt, JM
.
MOLECULAR & CELLULAR PROTEOMICS,
2005, 4 (07)
:857-872

Beynon, RJ
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Liverpool, Fac Vet Sci, Prot Funct Grp, Liverpool L69 7ZJ, Merseyside, England Univ Liverpool, Fac Vet Sci, Prot Funct Grp, Liverpool L69 7ZJ, Merseyside, England

Pratt, JM
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Liverpool, Fac Vet Sci, Prot Funct Grp, Liverpool L69 7ZJ, Merseyside, England Univ Liverpool, Fac Vet Sci, Prot Funct Grp, Liverpool L69 7ZJ, Merseyside, England
[7]
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
[J].
Blagoev, B
;
Ong, SE
;
Kratchmarova, I
;
Mann, M
.
NATURE BIOTECHNOLOGY,
2004, 22 (09)
:1139-1145

Blagoev, B
论文数: 0 引用数: 0
h-index: 0
机构:
Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark

Ong, SE
论文数: 0 引用数: 0
h-index: 0
机构:
Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark

Kratchmarova, I
论文数: 0 引用数: 0
h-index: 0
机构:
Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark

Mann, M
论文数: 0 引用数: 0
h-index: 0
机构:
Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark
[8]
An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics:: application to Drosophila melanogaster Kc167 cells
[J].
Bodenmiller, Bernd
;
Mueller, Lukas N.
;
Pedrioli, Patrick G. A.
;
Pflieger, Delphine
;
Juenger, Martin A.
;
Eng, Jimmy K.
;
Aebersold, Ruedi
;
Tao, W. Andy
.
MOLECULAR BIOSYSTEMS,
2007, 3 (04)
:275-286

Bodenmiller, Bernd
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland

Mueller, Lukas N.
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland

Pedrioli, Patrick G. A.
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland

Pflieger, Delphine
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland

Juenger, Martin A.
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland

Eng, Jimmy K.
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland

Aebersold, Ruedi
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Inst Mol Syst Biol, Zurich, Switzerland ETH, Inst Mol Syst Biol, Zurich, Switzerland

Tao, W. Andy
论文数: 0 引用数: 0
h-index: 0
机构: ETH, Inst Mol Syst Biol, Zurich, Switzerland
[9]
Reproducible isolation of distinct, overlapping segments of the phosphoproteome
[J].
Bodenmiller, Bernd
;
Mueller, Lukas N.
;
Mueller, Markus
;
Domon, Bruno
;
Aebersold, Ruedi
.
NATURE METHODS,
2007, 4 (03)
:231-237

Bodenmiller, Bernd
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA

Mueller, Lukas N.
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA

Mueller, Markus
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA

Domon, Bruno
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA

Aebersold, Ruedi
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA
[10]
Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry
[J].
Brittain, SM
;
Ficarro, SB
;
Brock, A
;
Peters, EC
.
NATURE BIOTECHNOLOGY,
2005, 23 (04)
:463-468

Brittain, SM
论文数: 0 引用数: 0
h-index: 0
机构:
Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA

Ficarro, SB
论文数: 0 引用数: 0
h-index: 0
机构:
Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA

Brock, A
论文数: 0 引用数: 0
h-index: 0
机构:
Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA

Peters, EC
论文数: 0 引用数: 0
h-index: 0
机构:
Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA