Mapping protein post-translational modifications with mass spectrometry

被引:601
作者
Witze, Eric S.
Old, William M.
Resing, Katheryn A.
Ahn, Natalie G.
机构
[1] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
[2] Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
关键词
D O I
10.1038/nmeth1100
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Post-translational modifications of proteins control many biological processes, and examining their diversity is critical for understanding mechanisms of cell regulation. Mass spectrometry is a fundamental tool for detecting and mapping covalent modifications and quantifying their changes. Modern approaches have made large-scale experiments possible, screening complex mixtures of proteins for alterations in chemical modifications. By profiling protein chemistries, biologists can gain deeper insight into biological control. The aim of this review is introduce biologists to current strategies in mass spectrometry based proteomics that are used to characterize protein post-translational modifications, noting strengths and shortcomings of various approaches.
引用
收藏
页码:798 / 806
页数:9
相关论文
共 101 条
[1]   Mass spectrometry-based proteomics [J].
Aebersold, R ;
Mann, M .
NATURE, 2003, 422 (6928) :198-207
[2]   ISOLATION OF PHOSPHOPROTEINS BY IMMOBILIZED METAL (FE-3+) AFFINITY-CHROMATOGRAPHY [J].
ANDERSSON, L ;
PORATH, J .
ANALYTICAL BIOCHEMISTRY, 1986, 154 (01) :250-254
[3]   Inhibition of protein-tyrosine phosphatases by mild oxidative stresses is dependent on S-nitrosylation [J].
Barrett, DM ;
Black, SM ;
Todor, H ;
Schmidt-Ullrich, RK ;
Dawson, KS ;
Mikkelsen, RB .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (15) :14453-14461
[4]   Large-scale characterization of HeLa cell nuclear phosphoproteins [J].
Beausoleil, SA ;
Jedrychowski, M ;
Schwartz, D ;
Elias, JE ;
Villén, J ;
Li, JX ;
Cohn, MA ;
Cantley, LC ;
Gygi, SP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (33) :12130-12135
[5]   A probability-based approach for high-throughput protein phosphorylation analysis and site localization [J].
Beausoleil, Sean A. ;
Villen, Judit ;
Gerber, Scott A. ;
Rush, John ;
Gygi, Steven P. .
NATURE BIOTECHNOLOGY, 2006, 24 (10) :1285-1292
[6]   Metabolic labeling of proteins for proteomics [J].
Beynon, RJ ;
Pratt, JM .
MOLECULAR & CELLULAR PROTEOMICS, 2005, 4 (07) :857-872
[7]   Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics [J].
Blagoev, B ;
Ong, SE ;
Kratchmarova, I ;
Mann, M .
NATURE BIOTECHNOLOGY, 2004, 22 (09) :1139-1145
[8]   An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics:: application to Drosophila melanogaster Kc167 cells [J].
Bodenmiller, Bernd ;
Mueller, Lukas N. ;
Pedrioli, Patrick G. A. ;
Pflieger, Delphine ;
Juenger, Martin A. ;
Eng, Jimmy K. ;
Aebersold, Ruedi ;
Tao, W. Andy .
MOLECULAR BIOSYSTEMS, 2007, 3 (04) :275-286
[9]   Reproducible isolation of distinct, overlapping segments of the phosphoproteome [J].
Bodenmiller, Bernd ;
Mueller, Lukas N. ;
Mueller, Markus ;
Domon, Bruno ;
Aebersold, Ruedi .
NATURE METHODS, 2007, 4 (03) :231-237
[10]   Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry [J].
Brittain, SM ;
Ficarro, SB ;
Brock, A ;
Peters, EC .
NATURE BIOTECHNOLOGY, 2005, 23 (04) :463-468