An ab initio study of hydrogen bonding effects on the 15N and 1H chemical shielding tensors in the Watson-Crick base pairs

被引:25
作者
Czerneky, J
机构
[1] Clark Univ, Gustav H Carlson Sch Chem, Worcester, MA 01610 USA
[2] Acad Sci Czech Republ, Inst Macromol Chem, Prague 16206 6, Czech Republic
关键词
D O I
10.1021/jp003471g
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Density functional theory is applied to explore changes upon hydrogen bonding in the N-15 and H-1 nuclear magnetic resonance (NMR) chemical shielding tensors of the imino group in the Watson-Crick nucleic acid base pairs. The dependence of results on the quantum chemical method used, on the basis set superposition error, and on the effect of the relaxation of the base pair geometry with changing hydrogen bond length is addressed. The systematic variation with changing separation between bases in calculated shielding data and resulting auto- and cross-corelation chemical shift anisotropy parameters is documented. Possible implications for NMR studies of the dynamics of N-15-H-1 bond vectors and for transverse relaxation-optimized spectroscopy experiments on imino protons are discussed.
引用
收藏
页码:1357 / 1365
页数:9
相关论文
共 58 条
[1]  
Abragam A., 1961, PRINCIPLES NUCL MAGN
[2]  
Akke M, 1997, RNA, V3, P702
[3]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[4]   CORRELATIONS BETWEEN PROTON CHEMICAL-SHIFT TENSORS, DEUTERIUM QUADRUPOLE COUPLINGS, AND BOND DISTANCES FOR HYDROGEN-BONDS IN SOLIDS [J].
BERGLUND, B ;
VAUGHAN, RW .
JOURNAL OF CHEMICAL PHYSICS, 1980, 73 (05) :2037-2043
[5]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&
[6]  
BOYS SF, 1966, QUANTUM THEORY ATOMS, P263
[7]  
Bühl M, 1999, J COMPUT CHEM, V20, P91, DOI 10.1002/(SICI)1096-987X(19990115)20:1<91::AID-JCC10>3.0.CO
[8]  
2-C
[9]   Calculations of NMR dipolar coupling strengths in model peptides [J].
Case, DA .
JOURNAL OF BIOMOLECULAR NMR, 1999, 15 (02) :95-102
[10]   A comparison of models for calculating nuclear magnetic resonance shielding tensors [J].
Cheeseman, JR ;
Trucks, GW ;
Keith, TA ;
Frisch, MJ .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (14) :5497-5509