NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment

被引：37

作者：

Carr, Rogan ^{[1
]}

Borenstein, Elhanan ^{[1
,2
,3
]}

机构：

[1] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA

[2] Univ Washington, Dept Comp Sci & Engn, Seattle, WA 98195 USA

[3] Santa Fe Inst, Santa Fe, NM 87501 USA

来源：

BIOINFORMATICS | 2012年 / 28卷 / 05期

关键词：

LARGE-SCALE ORGANIZATION; EVOLUTION; TOPOLOGY;

D O I：

10.1093/bioinformatics/btr721

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

NetSeed is a web tool and Perl module for analyzing the topology of metabolic networks and calculating the set of exogenously acquired compounds. NetSeed is based on the seed detection algorithm, developed and validated in previous studies. Availability: The NetSeed web-based tool, open-source Perl module, examples and documentation are freely available online at: http://depts.washington.edu/elbogs/NetSeed.

引用

页码：734 / 735

页数：2

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