RF-Cloning.org: an online tool for the design of restriction-free cloning projects

被引:146
作者
Bond, Stephen R. [1 ]
Naus, Christian C. [1 ]
机构
[1] Univ British Columbia, Dept Cellular & Physiol Sci, Inst Life Sci, Vancouver, BC V6T 1Z3, Canada
关键词
DNA CLONING; SITE; ENZYMES; GENES;
D O I
10.1093/nar/gks396
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Restriction-free cloning (RF-cloning) is a PCR-based technology that expands on the QuikChange (TM) mutagenesis process originally popularized by Stratagene in the mid-1990s, and allows the insertion of essentially any sequence into any plasmid at any location. While RF-cloning is a powerful tool for the design of custom plasmids when restriction sites are not conveniently situated, manually designing the requisite primers can be tedious and error prone. We present here a web-service that automates the primer design process, along with a user interface that includes a number of useful tools for managing both the input sequences and the resulting outputs. RF-Cloning is free and open to all users, and can be accessed at http://www.rf-cloning.org.
引用
收藏
页码:W209 / W213
页数:5
相关论文
共 16 条
[1]   Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids [J].
Bryksin, Anton V. ;
Matsumura, Ichiro .
BIOTECHNIQUES, 2010, 48 (06) :463-465
[2]   BLAST plus : architecture and applications [J].
Camacho, Christiam ;
Coulouris, George ;
Avagyan, Vahram ;
Ma, Ning ;
Papadopoulos, Jason ;
Bealer, Kevin ;
Madden, Thomas L. .
BMC BIOINFORMATICS, 2009, 10
[3]   Restriction site-free insertion of PCR products directionally into vectors [J].
Chen, GJ ;
Qiu, N ;
Karrer, C ;
Caspers, P ;
Page, MGP .
BIOTECHNIQUES, 2000, 28 (03) :498-+
[4]  
DIEFFENBACH CW, 1993, PCR METH APPL, V3, pS30
[5]   PlasMapper: a web server for drawing and auto-annotating plasmid maps [J].
Dong, XL ;
Stothard, P ;
Forsythe, IJ ;
Wishart, DS .
NUCLEIC ACIDS RESEARCH, 2004, 32 :W660-W664
[6]   Transfer-PCR (TPCR): A highway for DNA cloning and protein engineering [J].
Erijman, Ariel ;
Dantes, Ada ;
Bernheim, Reut ;
Shifman, Julia M. ;
Peleg, Yoav .
JOURNAL OF STRUCTURAL BIOLOGY, 2011, 175 (02) :171-177
[7]   Integration of PCR fragments at any specific site within cloning vectors without the use of restriction enzymes and DNA ligase [J].
Geiser, M ;
Cèbe, R ;
Drewello, D ;
Schmitz, R .
BIOTECHNIQUES, 2001, 31 (01) :88-+
[8]   DNA cloning using in vitro site-specific recombination [J].
Hartley, JL ;
Temple, GF ;
Brasch, MA .
GENOME RESEARCH, 2000, 10 (11) :1788-1795
[9]   SITE-DIRECTED MUTAGENESIS BY OVERLAP EXTENSION USING THE POLYMERASE CHAIN-REACTION [J].
HO, SN ;
HUNT, HD ;
HORTON, RM ;
PULLEN, JK ;
PEASE, LR .
GENE, 1989, 77 (01) :51-59
[10]   ENGINEERING HYBRID GENES WITHOUT THE USE OF RESTRICTION ENZYMES - GENE-SPLICING BY OVERLAP EXTENSION [J].
HORTON, RM ;
HUNT, HD ;
HO, SN ;
PULLEN, JK ;
PEASE, LR .
GENE, 1989, 77 (01) :61-68