β-hairpin and β-sheet formation in designed linear peptides

被引:110
作者
Ramírez-Alvarado, M
Kortemme, T
Blanco, FJ
Serrano, L
机构
[1] European Mol Biol Lab, D-69117 Heidelberg, Germany
[2] NIDDKD, NIH, Chem Phys Lab, Bethesda, MD 20892 USA
关键词
beta-hairpin; beta-sheet; peptides; protein folding; NMR;
D O I
10.1016/S0968-0896(98)00215-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent knowledge about the determinants of beta-sheet formation and stability has notably been improved by the structural analysis of model peptides with beta-hairpin structure in aqueous solution. Several experimental studies have shown that the turn region residues can not only determine the stability, but also the conformation of the beta-hairpin. Specific interstrand side-chain interactions, hydrophobic and polar, have been found to be important stabilizing interactions. The knowledge acquired in the recent years from peptide systems, together with the information gathered from mutants in proteins, and the analysis of known protein structures, has led to successful design of a folded three-stranded monomeric beta-sheet structure. (C) 1999 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:93 / 103
页数:11
相关论文
共 87 条
[1]   ICM - A NEW METHOD FOR PROTEIN MODELING AND DESIGN - APPLICATIONS TO DOCKING AND STRUCTURE PREDICTION FROM THE DISTORTED NATIVE CONFORMATION [J].
ABAGYAN, R ;
TOTROV, M ;
KUZNETSOV, D .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1994, 15 (05) :488-506
[2]   TENDAMISTAT (12-26) FRAGMENT - NMR CHARACTERIZATION OF ISOLATED BETA-TURN FOLDING INTERMEDIATES [J].
BLANCO, FJ ;
JIMENEZ, MA ;
RICO, M ;
SANTORO, J ;
HERRANZ, J ;
NIETO, JL .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1991, 200 (02) :345-351
[3]   NMR SOLUTION STRUCTURE OF THE ISOLATED N-TERMINAL FRAGMENT OF PROTEIN-G B-1 DOMAIN - EVIDENCE OF TRIFLUOROETHANOL INDUCED NATIVE-LIKE B-HAIRPIN FORMATION [J].
BLANCO, FJ ;
JIMENEZ, MA ;
PINEDA, A ;
RICO, M ;
SANTORO, J ;
NIETO, JL .
BIOCHEMISTRY, 1994, 33 (19) :6004-6014
[4]   NMR EVIDENCE OF A SHORT LINEAR PEPTIDE THAT FOLDS INTO A BETA-HAIRPIN IN AQUEOUS-SOLUTION [J].
BLANCO, FJ ;
JIMENEZ, MA ;
HERRANZ, J ;
RICO, M ;
SANTORO, J ;
NIETO, JL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (13) :5887-5888
[5]   A SHORT LINEAR PEPTIDE THAT FOLDS INTO A NATIVE STABLE BETA-HAIRPIN IN AQUEOUS-SOLUTION [J].
BLANCO, FJ ;
RIVAS, G ;
SERRANO, L .
NATURE STRUCTURAL BIOLOGY, 1994, 1 (09) :584-590
[6]  
BLANCO FJ, 1995, EUR J BIOCHEM, V230, P634
[7]   STUDIES OF SYNTHETIC HELICAL PEPTIDES USING CIRCULAR-DICHROISM AND NUCLEAR-MAGNETIC-RESONANCE [J].
BRADLEY, EK ;
THOMASON, JF ;
COHEN, FE ;
KOSEN, PA ;
KUNTZ, ID .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (04) :607-622
[8]   HELIX-COIL TRANSITION OF ISOLATED AMINO TERMINUS OF RIBONUCLEASE [J].
BROWN, JE ;
KLEE, WA .
BIOCHEMISTRY, 1971, 10 (03) :470-&
[9]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[10]   STABILITY OF ALPHA-HELICES [J].
CHAKRABARTTY, A ;
BALDWIN, RL .
ADVANCES IN PROTEIN CHEMISTRY, VOL 46, 1995, 46 :141-176