lambda-Dynamics: A new approach to free energy calculations

被引:305
作者
Kong, XJ
Brooks, CL
机构
[1] Department of Molecular Biology, Scripps Research Institute, San Diego, CA 92037
关键词
D O I
10.1063/1.472109
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a novel and efficient method for performing free energy calculations. Treating the conventional lambda variables associated with the ''progress'' in the chemical coordinates dynamically, our approach transforms free energy calculations into calculating potentials of mean force in the lambda-space with molecular dynamics. This extended Hamiltonian formalism utilizes the full power of umbrella sampling techniques and the weighted histogram analysis method. Applications to free energies of hydration and a model illustrating competitive binding calculations are presented. These calculations demonstrate the robustness and flexibility of the new lambda-dynamics approach. (C) 1996 American Institute of Physics.
引用
收藏
页码:2414 / 2423
页数:10
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