Many ligninolytic fungi appear to lack lignin peroxidase (LiP), the enzyme generally thought to cleave the major, recalcitrant, nonphenolic structures in lignin, At least one such fungus, Ceriporiopsis subvermispora, is nevertheless able to degrade these nonphenolic structures, Experiments showed that wood block cultures and defined liquid medium cultures of C. subvermispora rapidly depolymerized and mineralized a C-14-labeled, polyethylene glycol-linked, high-molecular-weight beta-O-4 lignin model compound (model I) that represents the major nonphenolic structure of lignin, The fungus cleaved model I between C-alpha and C-beta to release benzylic fragments, which were shown in isotope trapping experiments to be major products of model I metabolism, The C-alpha-C-beta cleavage of beta-O-4 lignin structures to release benzylic fragments is characteristic of LiP catalysis, but assays of C. subvermispora liquid cultures that were metabolizing model I confirmed that the fungus produced no detectable LiP activity, Three results pointed, instead, to the participation of a different enzyme, manganese peroxidase (MnP), in the degradation of nonphenolic lignin structures by C, subvermispora, (i) The degradation of model I and of exhaustively methylated (nonphenolic), C-14-labeled, synthetic lignin by the fungus in liquid cultures was almost completely inhibited when the Mn concentration of the medium was decreased from 35 mu M to approximately 5 mu M. (ii) The fungus degraded model I and methylated lignin significantly faster in the presence of Tween 80, a source of unsaturated fatty acids, than it did in the presence of Tween 20, which contains only saturated fatty acids, Previous work has shown that nonphenolic lignin structures are degraded during the MnP-mediated peroxidation of unsaturated lipids. (iii) In experiments crith MnP, Mn(II), and unsaturated lipid in vitro, this system mimicked intact C. subvermispora cultures in that it cleaved nonphenolic beta-O-4 lignin model compounds between C-alpha and C-beta to release a benzylic fragment.