Investigation into Potent Inflammation Inhibitors from Traditional Chinese Medicine

被引:53
作者
Chen, Kuan-Chung [1 ]
Sun, Mao-Feng [1 ,2 ]
Yang, Shun-Chieh [1 ]
Chang, Su-Sen [1 ]
Chen, Hsin-Yi [3 ]
Tsai, Fuu-Jen [3 ,4 ]
Chen, Calvin Yu-Chian [1 ,3 ,5 ,6 ]
机构
[1] China Med Univ, Lab Computat & Syst Biol, Sch Chinese Med, Taichung 40402, Taiwan
[2] China Med Univ Hosp, Dept Acupuncture, Taichung, Taiwan
[3] Asia Univ, Dept Bioinformat, Taichung 41354, Taiwan
[4] China Med Univ, Dept Med Genet, Taichung 40402, Taiwan
[5] Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA
[6] China Med Univ, Beigan Hosp, Yunlin 65152, Taiwan
关键词
anti-inflammation; docking; molecular dynamics; m-PGES-1; quantitative structure-activity relationship; traditional Chinese medicine; PROSTAGLANDIN E-2 SYNTHASE-1; DRUG DESIGN; MOLECULAR-DYNAMICS; ANTIINFLAMMATORY DRUGS; MPGES-1; INHIBITORS; QSAR; RECEPTOR; DOCKING; MINIMIZATION; DATABASE;
D O I
10.1111/j.1747-0285.2011.01202.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
Microsomal prostaglandin E synthase-1 (mPGES-1) is the key enzyme for prostaglandin E2 (PGE2) generation during inflammation and is a potential target for designing anti-inflammatory drugs. Potential inhibitors of m-PGES-1 were selected from traditional Chinese medicine (TCM Database@Taiwan) based on the pharmacophore map generated by the top HypoGen hypothesis and validated using structure-and ligand-based analysis. Key features for potential m-PGES-1 inhibitors include pi-interactions and H-bond donors. TCM compounds, shanciol B, shanciol A, castilliferol, and aurantiamide acetate, contoured to the quantitative structure-activity relationship pharmacophore and exhibited high docking scores and binding stability with m-PGES-1. Bioactivity models multiple linear regression (MLR) and support vector machine also supported activity predictions for the candidate compounds. Our results indicate that the investigated TCM compounds could be of use for development into mPGES-1 inhibitors.
引用
收藏
页码:679 / 688
页数:10
相关论文
共 42 条
[1]
*ACC SOFTW INC, 2009, DISC STUD MOD ENV
[2]
[Anonymous], 1969, OPTIMIZATION
[3]
CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[4]
Drug design for mPGES-1 from traditional Chinese medicine database: A screening, docking, QSAR, molecular dynamics, and pharmacophore mapping study [J].
Chang, Tung-Ti ;
Sun, Mao-Feng ;
Wong, Yung-Hao ;
Yang, Shun-Chieh ;
Chen, Kuan-Chung ;
Chen, Hsin-Yi ;
Tsai, Fuu-Jen ;
Chen, Calvin Yu-Chian .
JOURNAL OF THE TAIWAN INSTITUTE OF CHEMICAL ENGINEERS, 2011, 42 (04) :580-591
[5]
Key Features for Designing Phosphodiesterase-5 Inhibitors [J].
Chang, Tung-Ti ;
Huang, Hung-Jin ;
Lee, Kuei-Jen ;
Yu, Hsin Wei ;
Chen, Hsin-Yi ;
Tsai, Fuu-Jen ;
Sun, Mao-Feng ;
Chen, Calvin Yu-Chian .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2010, 28 (03) :309-321
[10]
Insights into designing the dual-targeted HER2/HSP90 inhibitors [J].
Chen, Chien-Yu ;
Chen, Calvin Yu-Chian .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2010, 29 (01) :21-31