Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

被引:506
作者
Wang, WX [1 ]
Zhou, HH [1 ]
Lin, H [1 ]
Roy, S [1 ]
Shaler, TA [1 ]
Hill, LR [1 ]
Norton, S [1 ]
Kumar, P [1 ]
Anderle, M [1 ]
Becker, CH [1 ]
机构
[1] SurroMed Inc, Mountain View, CA 94043 USA
关键词
D O I
10.1021/ac026468x
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
A new method is presented for quantifying proteomic and metabolomic profile data by liquid chromatography-mass spectrometry (LC-MS) with electrospray ionization. This biotechnology provides differential expression measurements and enables the discovery of biological markers (biomarkers). Work presented here uses human serum but is applicable to any fluid or tissue. The approach relies on linearity of signal versus molecular concentration and reproducibility of sample processing. There is no use of isotopic labeling or chemically similar standard materials. Linear standard curves are reported for a variety of compounds introduced into human serum. As a measure of analytical reproducibility for proteome and metabolome sampling, median coefficients of variation of 25.7 and 23.8%, respectively, were determined for similar to3400 molecular ions (not counting their numerous isotopes) from 25 independently processed human serum samples, corresponding to a total of 85 000 individual molecular ion measurements.
引用
收藏
页码:4818 / 4826
页数:9
相关论文
共 30 条
[1]   Template matching: Matched spatial filters and beyond [J].
Brunelli, R ;
Poggio, T .
PATTERN RECOGNITION, 1997, 30 (05) :751-768
[2]   Practical quantitative biomedical applications of MALDI-TOF mass spectrometry [J].
Bucknall, M ;
Fung, KYC ;
Duncan, MW .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2002, 13 (09) :1015-1027
[3]   De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging [J].
Cagney, G ;
Emili, A .
NATURE BIOTECHNOLOGY, 2002, 20 (02) :163-170
[4]  
CAPRIOLI RM, 1972, BIOCH APPLICATIONS M, P735
[5]   Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry [J].
Chelius, D ;
Bondarenko, PV .
JOURNAL OF PROTEOME RESEARCH, 2002, 1 (04) :317-323
[6]   AN APPROACH TO CORRELATE TANDEM MASS-SPECTRAL DATA OF PEPTIDES WITH AMINO-ACID-SEQUENCES IN A PROTEIN DATABASE [J].
ENG, JK ;
MCCORMACK, AL ;
YATES, JR .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1994, 5 (11) :976-989
[7]   Quantitative analysis of complex protein mixtures using isotope-coded affinity tags [J].
Gygi, SP ;
Rist, B ;
Gerber, SA ;
Turecek, F ;
Gelb, MH ;
Aebersold, R .
NATURE BIOTECHNOLOGY, 1999, 17 (10) :994-999
[8]   QUANTITATIVE STUDIES ON PROSTAGLANDIN SYNTHESIS IN MAN .2. DETERMINATION OF MAJOR URINARY METABOLITE OF PROSTAGLANDINS-F1ALPHA AND F2ALPHA1 [J].
HAMBERG, M .
ANALYTICAL BIOCHEMISTRY, 1973, 55 (02) :368-378
[9]   New algorithms for processing and peak detection in liquid chromatography/mass spectrometry data [J].
Hastings, CA ;
Norton, SM ;
Roy, S .
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2002, 16 (05) :462-467
[10]   Elimination of water from the human body [J].
Hevesy, G ;
Hofer, E .
NATURE, 1934, 134 :879-879