jPHYDIT: a JAVA']JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences

被引：171

作者：

Jeon, YS

Chung, HW

Park, S

Hur, I

Lee, JH

Chun, J ^{[1
]}

机构：

[1] Seoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea

[2] Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea

来源：

BIOINFORMATICS | 2005年 / 21卷 / 14期

关键词：

D O I：

10.1093/bioinformatics/bti463

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

jPHYDIT is a Java application designed to furnish a visual and integrated environment for molecular phylogeny. The program can be used to visualize intra-strand base-pairing information in secondary and tertiary structures of ribosomal RNA ( rRNA) sequences. A function for the semi-automated alignment was included to facilitate handling of the database containing a large number of multiple-aligned rRNA sequences. Integration of nucleotide sequence editing, pair-wise alignment, multiple alignment and phylogenetic treeing functions provide an easy and efficient way of analyzing rRNA sequences for molecular evolution, systematics, epidemiology and ecology.

引用

页码：3171 / 3173

页数：3

共 9 条

[1] The Comparative RNA Web (CRW) Site:: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs -: art. no. 2 [J].