Distinct eRF3 requirements suggest alternate eRF1 conformations mediate peptide release during eukaryotic translation termination

被引:58
作者
Fan-Minogue, Hua [1 ]
Du, Ming [1 ]
Pisarev, Andrey V. [2 ]
Kallmeyer, Adam K. [1 ]
Salas-Marco, Joe [1 ]
Keeling, Kim M. [1 ]
Thompson, Sunnie R. [1 ]
Pestova, Tatyana V. [2 ]
Bedwell, David M. [1 ]
机构
[1] Univ Alabama, Dept Microbiol, Birmingham, AL 35294 USA
[2] Suny Downstate Med Ctr, Dept Microbiol & Immunol, Brooklyn, NY 11203 USA
关键词
D O I
10.1016/j.molcel.2008.03.020
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Organisms that use the standard genetic code recognize UAA, UAG, and UGA as stop codons, whereas variant code species frequently alter this pattern of stop codon recognition. We previously demonstrated that a hybrid eRF1 carrying the Euplotes octocarinatus domain 1 fused to Saccharomyces cerevisiae domains 2 and 3 (Eo/Sc eRF1) recognized UAA and UAG, but not UGA, as stop codons. In the current study, we identified mutations in Eo/Sc eRF1 that restore UGA recognition and define distinct roles for the TASNIKS and YxCxxxF motifs in eRF1 function. Mutations in or near the YxCxxxF motif support the cavity model for stop codon recognition by eRF1. Mutations in the TASNIKS motif eliminated the eRF3 requirement for peptide release at UAA and UAG codons, but not UGA codons. These results suggest that the TASNIKS motif and eRF3 function together to trigger eRF1 conformational changes that couple stop codon recognition and peptide release during eukaryotic translation termination.
引用
收藏
页码:599 / 609
页数:11
相关论文
共 31 条
[1]   In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3 [J].
Alkalaeva, Elena Z. ;
Pisarev, Andrey V. ;
Frolova, Lyudmila Y. ;
Kisselev, Lev L. ;
Pestova, Tatyana V. .
CELL, 2006, 125 (06) :1125-1136
[2]   Terminating eukaryote translation: Domain 1 of release factor eRF1 functions in stop codon recognition [J].
Bertram, G ;
Bell, HA ;
Ritchie, DW ;
Fullerton, G ;
Stansfield, I .
RNA, 2000, 6 (09) :1236-1247
[3]   THE EFFICIENCY OF TRANSLATION TERMINATION IS DETERMINED BY A SYNERGISTIC INTERPLAY BETWEEN UPSTREAM AND DOWNSTREAM SEQUENCES IN SACCHAROMYCES-CEREVISIAE [J].
BONETTI, B ;
FU, LW ;
MOON, J ;
BEDWELL, DM .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 251 (03) :334-345
[4]   The invariant uridine of stop codons contacts the conserved NIKSR loop of human eRF1 in the ribosome [J].
Chavatte, L ;
Seit-Nebi, A ;
Dubovaya, V ;
Favre, A .
EMBO JOURNAL, 2002, 21 (19) :5302-5311
[5]   The C-terminus of eRF1 defines a functionally important domain for translation termination in Saccharomyces cerevisiae [J].
Eurwilaichitr, L ;
Graves, FM ;
Stansfield, I ;
Tuite, MF .
MOLECULAR MICROBIOLOGY, 1999, 32 (03) :485-496
[6]   Highly conserved NIKS tetrapeptide is functionally essential in eukaryotic translation termination factor eRF1 [J].
Frolova, L ;
Seit-Nebi, A ;
Kisselev, L .
RNA, 2002, 8 (02) :129-136
[7]   Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis [J].
Frolova, LY ;
Tsivkovskii, RY ;
Sivolobova, GF ;
Oparina, NY ;
Serpinsky, OI ;
Blinov, VM ;
Tatkov, SI ;
Kisselev, LL .
RNA, 1999, 5 (08) :1014-1020
[8]  
Grentzmann G, 1998, RNA, V4, P479
[9]  
Howard MT, 2000, ANN NEUROL, V48, P164, DOI 10.1002/1531-8249(200008)48:2<164::AID-ANA5>3.0.CO
[10]  
2-B