PSIbase: A database of Protein Structural Interactome map (PSIMAP)

被引：66

作者：

Gong, S

Yoon, G

Jang, I

Bolser, D

Dafas, P

Schroeder, M

Choi, H

Cho, YB

Han, KS

Lee, S

Choi, H

Lappe, M

Holm, L

Kim, S

Oh, D

Bhak, J ^{[1
]}

机构：

[1] Korea Adv Inst Sci & Technol, Dept BioSyst, Biomat Lab, Taejon 305701, South Korea

[2] OITEK, Taejon, South Korea

[3] KRIBB, NGIC, Taejon, South Korea

[4] MRC DUNN, Cambridge, England

[5] City Univ London, London, England

[6] Tech Univ Dresden, Biotechnol Zentrum, Dresden, Germany

[7] Inha Univ, Inchon, South Korea

[8] Max Planck Inst Mol Genet, Berlin, Germany

[9] Univ Helsinki, FIN-00014 Helsinki, Finland

[10] Korea Adv Inst Sci & Technol, BiO Ctr, Taejon 305701, South Korea

来源：

BIOINFORMATICS | 2005年 / 21卷 / 10期

关键词：

D O I：

10.1093/bioinformatics/bti366

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.

引用

页码：2541 / 2543

页数：3

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