A simple and efficient method for concentration of ocean viruses by chemical flocculation

被引:216
作者
John, Seth G. [1 ,3 ]
Mendez, Carolina B. [1 ,4 ]
Deng, Li [5 ]
Poulos, Bonnie [5 ]
Kauffman, Anne Kathryn M. [6 ]
Kern, Suzanne [2 ]
Brum, Jennifer [5 ]
Polz, Martin F.
Boyle, Edward A. [1 ]
Sullivan, Matthew B. [5 ]
机构
[1] MIT, Dept Earth Atmospher & Planetary Sci, Cambridge, MA 02139 USA
[2] MIT, Dept Biol, Cambridge, MA 02139 USA
[3] CALTECH, Div Geol & Planetary Sci, Pasadena, CA 91125 USA
[4] Univ Texas Austin, Austin, TX 78712 USA
[5] Univ Arizona, Dept Ecol & Evolutionary Biol, Tucson, AZ USA
[6] MIT, Woods Hole Oceanog Inst, Joint Program Biol Oceanog, Cambridge, MA 02139 USA
来源
ENVIRONMENTAL MICROBIOLOGY REPORTS | 2011年 / 3卷 / 02期
基金
美国国家科学基金会;
关键词
MARINE VIRUSES; PHOTOSYNTHESIS GENES; CYANOBACTERIUM PROCHLOROCOCCUS; AQUATIC ENVIRONMENTS; NATURAL-WATERS; REMOVAL; IRON; SYNECHOCOCCUS; COAGULATION; DIVERSITY;
D O I
10.1111/j.1758-2229.2010.00208.x
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
P>Ocean viruses alter ecosystems through host mortality, horizontal gene transfer and by facilitating remineralization of limiting nutrients. However, the study of wild viral populations is limited by inefficient and unreliable concentration techniques. Here, we develop a new technique to recover viruses from natural waters using iron-based flocculation and large-pore-size filtration, followed by resuspension of virus-containing precipitates in a pH 6 buffer. Recovered viruses are amenable to gene sequencing, and a variable proportion of phages, depending upon the phage, retain their infectivity when recovered. This Fe-based virus flocculation, filtration and resuspension method (FFR) is efficient (> 90% recovery), reliable, inexpensive and adaptable to many aspects of marine viral ecology and genomics research.
引用
收藏
页码:195 / 202
页数:8
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