The BioStudies database-one stop shop for all data supporting a life sciences study

被引:125
作者
Sarkans, Ugis [1 ]
Gostev, Mikhail [1 ]
Athar, Awais [1 ]
Behrangi, Ehsan [1 ]
Melnichuk, Olga [1 ]
Ali, Ahmed [1 ]
Minguet, Jasmine [1 ]
Rada, Juan Camillo [1 ]
Snow, Catherine [1 ]
Tikhonov, Andrew [1 ]
Brazma, Alvis [1 ]
McEntyre, Johanna [1 ]
机构
[1] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Hinxton CB10 1SD, England
基金
英国惠康基金;
关键词
UPDATE;
D O I
10.1093/nar/gkx965
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BioStudies (www.ebi.ac.uk/biostudies) is a new public database that organizes data from biological studies. Typically, but not exclusively, a study is associated with a publication. BioStudies offers a simple way to describe the study structure, and provides flexible data deposition tools and data access interfaces. The actual data can be stored either in BioStudies or remotely, or both. BioStudies imports supplementary data from Europe PMC, and is a resource for authors and publishers for packaging data during the manuscript preparation process. It also can support data management needs of collaborative projects. The growth in multiomics experiments and other multi-faceted approaches to life sciences research mean that studies result in a diversity of data outputs in multiple locations. BioStudies presents a solution to ensuring that all these data and the associated publication(s) can be found coherently in the longer term.
引用
收藏
页码:D1266 / D1270
页数:5
相关论文
共 14 条
[1]  
Bohannon J, 2017, SCIENCE, V356, P690, DOI [10.1126/science.356.6339.690, 10.1126/science.356.6339.691]
[2]   Updates to BioSamples database at European Bioinformatics Institute [J].
Faulconbridge, Adam ;
Burdett, Tony ;
Brandizi, Marco ;
Gostev, Mikhail ;
Pereira, Rui ;
Vasant, Drashtti ;
Sarkans, Ugis ;
Brazma, Alvis ;
Parkinson, Helen .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D50-D52
[3]   Europe PMC: a full-text literature database for the life sciences and platform for innovation [J].
Gou, Yuci ;
Graff, Florian ;
Kilian, Oliver ;
Kafkas, Senay ;
Katuri, Jyothi ;
Kim, Jee-Hyub ;
Marinos, Nikos ;
McEntyre, Johanna ;
Morrison, Andrew ;
Pi, Xingjun ;
Rossiter, Philip ;
Talo, Francesco ;
Vartak, Vid ;
Coleman, Lee-Ann ;
Hawkins, Craig ;
Kinsey, Anna ;
Mansoor, Sami ;
Morris, Victoria ;
Rowbotham, Rob ;
Chaplin, David ;
MacIntyre, Ross ;
Patel, Yogesh ;
Ananiadou, Sophia ;
Black, William J. ;
McNaught, John ;
Rak, Rafal ;
Rowley, Andrew .
NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D1042-D1048
[4]   MetaboLights-an open-access general-purpose repository for metabolomics studies and associated meta-data [J].
Haug, Kenneth ;
Salek, Reza M. ;
Conesa, Pablo ;
Hastings, Janna ;
de Matos, Paula ;
Rijnbeek, Mark ;
Mahendraker, Tejasvi ;
Williams, Mark ;
Neumann, Steffen ;
Rocca-Serra, Philippe ;
Maguire, Eamonn ;
Gonzalez-Beltran, Alejandra ;
Sansone, Susanna-Assunta ;
Griffin, Julian L. ;
Steinbeck, Christoph .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D781-D786
[5]   diXa: a data infrastructure for chemical safety assessment [J].
Hendrickx, Diana M. ;
Aerts, Hugo J. W. L. ;
Caiment, Florian ;
Clark, Dominic ;
Ebbels, Timothy M. D. ;
Evelo, Chris T. ;
Gmuender, Hans ;
Hebels, Dennie G. A. J. ;
Herwig, Ralf ;
Hescheler, Juergen ;
Jennen, Danyel G. J. ;
Jetten, Marlon J. A. ;
Kanterakis, Stathis ;
Keun, Hector C. ;
Matser, Vera ;
Overington, John P. ;
Pilicheva, Ekaterina ;
Sarkans, Ugis ;
Segura-Lepe, Marcelo P. ;
Sotiriadou, Isaia ;
Wittenberger, Timo ;
Wittwehr, Clemens ;
Zanzi, Antonella ;
Kleinjans, Jos C. S. .
BIOINFORMATICS, 2015, 31 (09) :1505-1507
[6]   ArrayExpress update-simplifying data submissions [J].
Kolesnikov, Nikolay ;
Hastings, Emma ;
Keays, Maria ;
Melnichuk, Olga ;
Tang, Y. Amy ;
Williams, Eleanor ;
Dylag, Miroslaw ;
Kurbatova, Natalja ;
Brandizi, Marco ;
Burdett, Tony ;
Megy, Karyn ;
Pilicheva, Ekaterina ;
Rustici, Gabriella ;
Tikhonov, Andrew ;
Parkinson, Helen ;
Petryszak, Robert ;
Sarkans, Ugis ;
Brazma, Alvis .
NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D1113-D1116
[7]   Modeling sample variables with an Experimental Factor Ontology [J].
Malone, James ;
Holloway, Ele ;
Adamusiak, Tomasz ;
Kapushesky, Misha ;
Zheng, Jie ;
Kolesnikov, Nikolay ;
Zhukova, Anna ;
Brazma, Alvis ;
Parkinson, Helen .
BIOINFORMATICS, 2010, 26 (08) :1112-1118
[8]   The BioStudies database [J].
McEntyre, Jo ;
Sarkans, Ugis ;
Brazma, Alvis .
MOLECULAR SYSTEMS BIOLOGY, 2015, 11 (12)
[9]   FigShare [J].
Singh, Jatinder .
JOURNAL OF PHARMACOLOGY & PHARMACOTHERAPEUTICS, 2011, 2 (02) :138-139
[10]   European Nucleotide Archive in 2016 [J].
Toribio, Ana Luisa ;
Alako, Blaise ;
Amid, Clara ;
Cerdeno-Tarraga, Ana ;
Clarke, Laura ;
Cleland, Iain ;
Fairley, Susan ;
Gibson, Richard ;
Goodgame, Neil ;
ten Hoopen, Petra ;
Jayathilaka, Suran ;
Kay, Simon ;
Leinonen, Rasko ;
Liu, Xin ;
Martinez-Villacorta, Josue ;
Pakseresht, Nima ;
Rajan, Jeena ;
Reddy, Kethi ;
Rosello, Marc ;
Silvester, Nicole ;
Smirnov, Dmitriy ;
Vaughan, Daniel ;
Zalunin, Vadim ;
Cochrane, Guy .
NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) :D32-D36