Phylogenomics and the reconstruction of the tree of life

被引：865

作者：

Delsuc, F ^{[1
]}

Brinkmann, H ^{[1
]}

Philippe, H ^{[1
]}

机构：

[1] Univ Montreal, Ctr Robert Cedergren, Dept Biochim, Canadian Inst Adv Res, Montreal, PQ H3C 3J7, Canada

来源：

NATURE REVIEWS GENETICS | 2005年 / 6卷 / 05期

关键词：

D O I：

10.1038/nrg1603

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

As more complete genomes are sequenced, phylogenetic analysis is entering a new era - that of phylogenomics. One branch of this expanding field aims to reconstruct the evolutionary history of organisms on the basis of the analysis of their genomes. Recent studies have demonstrated the power of this approach, which has the potential to provide answers to several fundamental evolutionary questions. However, challenges for the future have also been revealed. The very nature of the evolutionary history of organisms and the limitations of current phylogenetic reconstruction methods mean that part of the tree of life might prove difficult, if not impossible, to resolve with confidence.

引用

收藏

页码：361 / 375

页数：15

相关论文

共 179 条

[1] The new animal phylogeny: Reliability and implications [J].

Adoutte, A ;

Balavoine, G ;

Lartillot, N ;

Lespinet, O ;

Prud'homme, B ;

de Rosa, R .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (09) :4453-4456

[2] Evidence for a clade of nematodes, arthropods and other moulting animals [J].

Aguinaldo, AMA ;

Turbeville, JM ;

Linford, LS ;

Rivera, MC ;

Garey, JR ;

Raff, RA ;

Lake, JA .

NATURE, 1997, 387 (6632) :489-493

[3] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[4] A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships [J].

Amrine-Madsen, H ;

Koepfli, KP ;

Wayne, RK ;

Springer, MS .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2003, 28 (02) :225-240

[5]

[Anonymous], 1959, ORIGIN SPECIES MEANS

[6] A kingdom-level phylogeny of eukaryotes based on combined protein data [J].

Baldauf, SL ;

Roger, AJ ;

Wenk-Siefert, I ;

Doolittle, WF .

SCIENCE, 2000, 290 (5493) :972-977

[7] The potential value of indels as phylogenetic markers: Position of trichomonads as a case study [J].

Bapteste, E ;

Philippe, H .

MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (06) :972-977

[8] The analysis of 100 genes supports the grouping of three highly divergent amoebae:: Dictyostelium, Entamoeba, and Mastigamoeba [J].

Bapteste, E ;

Brinkmann, H ;

Lee, JA ;

Moore, DV ;

Sensen, CW ;

Gordon, P ;

Duruflé, L ;

Gaasterland, T ;

Lopez, P ;

Müller, M ;

Philippe, H .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (03) :1414-1419

[9] Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny [J].

Barkman, TJ ;

Chenery, G ;

McNeal, JR ;

Lyons-Weiler, J ;

Ellisens, WJ ;

Moore, G ;

Wolfe, AD ;

dePamphilis, CW .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (24) :13166-13171

[10] COMBINING TREES AS A WAY OF COMBINING DATA SETS FOR PHYLOGENETIC INFERENCE, AND THE DESIRABILITY OF COMBINING GENE TREES [J].

BAUM, BR .

TAXON, 1992, 41 (01) :3-10

← 1 2 3 4 5 6 7 8 9 10 →