Multifractal characterization of complete genomes

被引:28
作者
Anh, V
Lau, KS
Yu, ZG
机构
[1] Queensland Univ Technol, Ctr Stat Sci & Ind Math, Brisbane, Qld 4001, Australia
[2] Chinese Univ Hong Kong, Dept Math, Shatin, Hong Kong, Peoples R China
[3] Xiangtan Univ, Dept Math, Hunan 411105, Peoples R China
来源
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL | 2001年 / 34卷 / 36期
关键词
D O I
10.1088/0305-4470/34/36/301
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
This paper develops a theory for characterization of DNA sequences based on their measure representation. The measures are shown to be random cascades generated by an infinitely divisible distribution. This probability distribution is uniquely determined by the exponent function in the multifractal theory of random cascades. Curve fitting to a large number of complete genomes of bacteria indicates that the gamma density function provides an excellent fit to the exponent function, and hence to the probability distribution of the complete genomes.
引用
收藏
页码:7127 / 7139
页数:13
相关论文
共 19 条
[1]   Stochastic models for fractal processes [J].
Anh, VV ;
Heyde, CC ;
Tieng, Q .
JOURNAL OF STATISTICAL PLANNING AND INFERENCE, 1999, 80 (1-2) :123-135
[2]   EFFECTIVE MULTIFRACTAL SPECTRUM OF A RANDOM-WALK [J].
BERTHELSEN, CL ;
GLAZIER, JA ;
RAGHAVACHARI, S .
PHYSICAL REVIEW E, 1994, 49 (03) :1860-1864
[3]  
Feller W., 1971, An introduction to probability theory and its applications, V2
[4]   NUCLEOTIDE, DINUCLEOTIDE AND TRINUCLEOTIDE FREQUENCIES EXPLAIN PATTERNS OBSERVED IN CHAOS GAME REPRESENTATIONS OF DNA-SEQUENCES [J].
GOLDMAN, N .
NUCLEIC ACIDS RESEARCH, 1993, 21 (10) :2487-2491
[5]  
GUPTA VK, 1993, J APPL METEOROL, V32, P251, DOI 10.1175/1520-0450(1993)032<0251:ASAOMR>2.0.CO
[6]  
2
[7]  
Hao B., 2000, ANN COMB, V4, P247
[8]   Fractals related to long DNA sequences and complete genomes [J].
Hao, BL ;
Lee, HC ;
Zhang, SY .
CHAOS SOLITONS & FRACTALS, 2000, 11 (06) :825-836
[9]  
Holley R., 1992, ANN APPL PROBAB, V2, P819, DOI DOI 10.1214/A0AP/1177005577
[10]   CHAOS GAME REPRESENTATION OF GENE STRUCTURE [J].
JEFFREY, HJ .
NUCLEIC ACIDS RESEARCH, 1990, 18 (08) :2163-2170