Characterisation of the 11Kb DNA region adjacent to the gene encoding Desulfovibrio gigas flavoredoxin

被引:2
作者
Broco, M
Marques, A
Oliveira, S
Rodrigues-Pousada, C [1 ]
机构
[1] Univ Nova Lisboa, Inst Tecnol Quim & Biol, P-2784505 Oeiras, Portugal
[2] Univ Evora, Dept Biol, P-7002554 Evora, Portugal
来源
DNA SEQUENCE | 2005年 / 16卷 / 03期
关键词
Desulfovibrio gigas; flavoredoxin; monocystronic; flanking regions;
D O I
10.1080/10425170500088296
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Flavoredoxin is an FMN binding protein that functions as an electron carrier in the sulphate metabolism of Desulfovibrio gigas. The neighbouring DNA regions of the gene encoding flavoredoxin were sequenced and characterised. Transcript analysis of the flavoredoxin gene resulted in a positive band corresponding to the size of the coding region, suggesting that flavoredoxin is encoded by a monocystronic unit, as previously suggested by sequence analysis. Analysis of the adjacent DNA regions revealed several interesting genes. The sequenced DNA regions contain nine open reading frames (ORFs) organised in two polycystronic and two monocystronic units. These genes encode proteins involved in different metabolic pathways, namely in DNA methylation, tRNA and rRNA modification, mRNA metabolism, cell division, CoA synthesis and lipoprotein transport across the membrane.
引用
收藏
页码:207 / 216
页数:10
相关论文
共 41 条
[1]   Molecular cloning of the gene encoding flavoredoxin, a flavoprotein from Desulfovibrio gigas [J].
Agostinho, M ;
Oliveira, S ;
Broco, M ;
Liu, MY ;
LeGall, J ;
Rodrigues-Pousada, C .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2000, 272 (03) :653-656
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]  
[Anonymous], SULFATE REDUCING BAC
[4]   Molecular characterization of the prokaryotic efp gene product involved in a peptidyltransferase reaction [J].
Aoki, H ;
Adams, SL ;
Turner, MA ;
Ganoza, MC .
BIOCHIMIE, 1997, 79 (01) :7-11
[5]  
Aravind L, 1999, In Silico Biol, V1, P69
[6]   Novel predicted RNA-binding domains associated with the translation machinery [J].
Aravind, L ;
Koonin, EV .
JOURNAL OF MOLECULAR EVOLUTION, 1999, 48 (03) :291-302
[7]  
Ausubel FM, 1995, CURRENT PROTOCOLS MO
[8]   N6-(DELTA2-ISOPENTENYL)ADENOSINE - BIOSYNTHESIS IN-VITRO IN TRANSFER RNA BY AN ENZYME PURIFIED FROM ESCHERICHIA-COLI [J].
BARTZ, JK ;
KLINE, LK ;
SOLL, D .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1970, 40 (06) :1481-&
[9]   A NEW ESCHERICHIA-COLI CELL-DIVISION GENE, FTSK [J].
BEGG, KJ ;
DEWAR, SJ ;
DONACHIE, WD .
JOURNAL OF BACTERIOLOGY, 1995, 177 (21) :6211-6222
[10]   Improved prediction of signal peptides: SignalP 3.0 [J].
Bendtsen, JD ;
Nielsen, H ;
von Heijne, G ;
Brunak, S .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 340 (04) :783-795