The past and future of structure databases

被引:8
作者
Berman, HM [1 ]
机构
[1] Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA
基金
美国国家科学基金会;
关键词
D O I
10.1016/S0958-1669(99)80014-7
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
For many years the primary source of information about biological macromolecules was the Protein Data Bank, which is a repository of files containing coordinates of biological macromolecules. Now a variety of databases has been developed in which structures are organized in different ways. Currently available are databases that classify molecules according to their overall structural characteristics or particular features of structures, as well as databases that focus on particular protein families in depth.
引用
收藏
页码:76 / 80
页数:5
相关论文
共 61 条
[1]   An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data [J].
Adzhubei, IA ;
Adzhubei, AA ;
Neidle, S .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :327-331
[2]  
Alexandrov NN, 1996, PROTEINS, V25, P354, DOI 10.1002/(SICI)1097-0134(199607)25:3<354::AID-PROT7>3.3.CO
[3]  
2-W
[4]   CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION [J].
ALLEN, FH ;
BELLARD, S ;
BRICE, MD ;
CARTWRIGHT, BA ;
DOUBLEDAY, A ;
HIGGS, H ;
HUMMELINK, T ;
HUMMELINKPETERS, BG ;
KENNARD, O ;
MOTHERWELL, WDS ;
RODGERS, JR ;
WATSON, DG .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT) :2331-2339
[5]   3DinSight: an integrated relational database and search tool for the structure, function and properties of biomolecules [J].
An, JH ;
Nakama, T ;
Kubota, Y ;
Sarai, A .
BIOINFORMATICS, 1998, 14 (02) :188-195
[6]   THE ENZYME DATA-BANK [J].
BAIROCH, A .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :3155-3156
[7]   The PROSITE database, its status in 1997 [J].
Bairoch, A ;
Bucher, P ;
Hofmann, K .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :217-221
[8]   Bioinformatics - Principles and potential of a new multidisciplinary tool [J].
Benton, D .
TRENDS IN BIOTECHNOLOGY, 1996, 14 (08) :261-272
[9]   Nucleic acid crystallography: A view from the nucleic acid database [J].
Berman, HM ;
Gelbin, A ;
Westbrook, J .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1996, 66 (03) :255-+
[10]   THE NUCLEIC-ACID DATABASE - A COMPREHENSIVE RELATIONAL DATABASE OF 3-DIMENSIONAL STRUCTURES OF NUCLEIC-ACIDS [J].
BERMAN, HM ;
OLSON, WK ;
BEVERIDGE, DL ;
WESTBROOK, J ;
GELBIN, A ;
DEMENY, T ;
HSIEH, SH ;
SRINIVASAN, AR ;
SCHNEIDER, B .
BIOPHYSICAL JOURNAL, 1992, 63 (03) :751-759