Visualization of the phylogenetic content of five genomes using dekapentagonal maps

被引：16

作者：

Zhaxybayeva, O

Hamel, L

Raymond, J

Gogarten, JP ^{[1
]}

机构：

[1] Univ Connecticut, Dept Mol & Cell Biol, Storrs, CT 06269 USA

[2] Univ Rhode Isl, Dept Comp Sci & Stat, Kingston, RI 02881 USA

[3] Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

来源：

GENOME BIOLOGY | 2004年 / 5卷 / 03期

基金：

美国国家航空航天局; 美国国家科学基金会;

关键词：

D O I：

10.1186/gb-2004-5-3-r20

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

The methods presented here summarize phylogenetic relationships of genomes in visually appealing and informative figures. Dekapentagonal maps depict phylogenetic information for orthologous genes present in five genomes, and provide a pre-screen for putatively horizontally transferred genes. If the majority of individual gene phylogenies are unresolved, bipartition histograms provide a means of uncovering and analyzing the plurality consensus. Analyses of genomes representing five photosynthetic bacterial phyla and of the prokaryotic contributions to the eukaryotic cell illustrate the utility of the methods.

引用

页数：11

共 46 条

[1] Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence [J].