An 15N NMR spin relaxation dispersion study of the folding of a pair of engineered mutants of apocytochrome b562

被引:34
作者
Choy, WY
Zhou, Z
Bai, YW
Kay, LE
机构
[1] Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Med Genet, Toronto, ON M5S 1A8, Canada
[3] Univ Toronto, Dept Microbiol, Toronto, ON M5S 1A8, Canada
[4] Univ Toronto, Dept Biochem & Chem, Toronto, ON M5S 1A8, Canada
[5] NCI, Biochem Lab, Bethesda, MD 20892 USA
关键词
D O I
10.1021/ja042560u
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
N-15 relaxation dispersion NMR spectroscopy has been used to study exchange dynamics in a pair of mutants of Rd-apocyt b(562), a redesigned four-helix-bundle protein. An analysis of the relaxation data over a range of temperatures establishes that exchange in both proteins is best modeled as two-state and that it derives from the folding/unfolding transition. These results are in accord with predictions based on the reaction coordinate for the folding of the protein determined from native-state hydrogen exchange data [Chu, R.; Pei, W.; Takei, J.; Bai, Y. Biochemistry 2002, 41, 7998-8003]. The kinetics and thermodynamics of the folding transition have been characterized in detail. Although only a narrow range of temperatures could be examined, it is clear that the folding rate temperature profile is distinctly non-Arrhenius for both mutants, with the folding barrier for at least one of them entropic.
引用
收藏
页码:5066 / 5072
页数:7
相关论文
共 38 条
[2]   Redesign of a four-helix bundle protein by phage display coupled with proteolysis and structural characterization by NMR and X-ray crystallography [J].
Chu, R ;
Takei, J ;
Knowlton, JR ;
Andrykovitch, M ;
Pei, WH ;
Kajava, AV ;
Steinbach, PJ ;
Ji, XH ;
Bai, YW .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 323 (02) :253-262
[3]   Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein [J].
Chu, RA ;
Pei, WH ;
Takei, J ;
Bai, YW .
BIOCHEMISTRY, 2002, 41 (25) :7998-8003
[4]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[5]   Evidence for slow motion in proteins by multiple refocusing of heteronuclear nitrogen/proton multiple quantum coherences in NMR [J].
Dittmer, J ;
Bodenhausen, G .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (05) :1314-1315
[6]   A LEISURELY LOOK AT THE BOOTSTRAP, THE JACKKNIFE, AND CROSS-VALIDATION [J].
EFRON, B ;
GONG, G .
AMERICAN STATISTICIAN, 1983, 37 (01) :36-48
[7]  
Efron B, 1986, STAT SCI, V1, P54, DOI [DOI 10.1214/SS/1177013815, 10.1214/ss/1177013815]
[8]   Enzyme dynamics during catalysis [J].
Eisenmesser, EZ ;
Bosco, DA ;
Akke, M ;
Kern, D .
SCIENCE, 2002, 295 (5559) :1520-1523
[9]   The activated complex and the absolute rate of chemical reactions [J].
Eyring, H .
CHEMICAL REVIEWS, 1935, 17 (01) :65-77
[10]   Specific non-native hydrophobic interactions in a hidden folding intermediate: Implications for protein folding [J].
Feng, HQ ;
Takei, J ;
Lipsitz, R ;
Tjandra, N ;
Bai, YW .
BIOCHEMISTRY, 2003, 42 (43) :12461-12465