Web-based GeneChip analysis system for large-scale collaborative projects

被引：11

作者：

Dai, Manhong ^{[1
]}

Wang, Pinglang ^{[1
]}

Jakupovic, Elvis ^{[1
]}

Watson, Stanley J. ^{[1
]}

Meng, Fan ^{[1
]}

机构：

[1] Univ Michigan, Mol & Behav Neurosci Inst, Dept Psychiat, Ann Arbor, MI 48109 USA

来源：

BIOINFORMATICS | 2007年 / 23卷 / 16期

关键词：

D O I：

10.1093/bioinformatics/btm297

中图分类号：

Q5 [生物化学];

学科分类号：

071010 [生物化学与分子生物学]; 081704 [应用化学];

摘要：

The Web-Based GeneChip Analysis System (WGAS) is developed to overcome limitations in analysis setup efficiency, data and procedure sharing, as well as security issues in existing commercial and public domain solutions. It also incorporates unique functions and resources for more accurate and flexible GeneChip analysis. Availability: WGAS is freely available at: http://arrayanalysis.mbni.med.umich.edu/arrayanalysis.html Contact: mengf@umich.edu

引用

页码：2185 / 2187

页数：3

共 15 条

[1]

*AFF, 2005, GENECHIP OP SOFTW MA

[2]

BOLSTAD B, 2007, AFFYPLM THREESTEP FU

[3]

Bolstad BM, 2004, INT REV NEUROBIOL, V60, P25

[4]

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [J].

Dai, MH ;

Wang, PL ;

Boyd, AD ;

Kostov, G ;

Athey, B ;

Jones, EG ;

Bunney, WE ;

Myers, RM ;

Speed, TP ;

Akil, H ;

Watson, SJ ;

Meng, F .

NUCLEIC ACIDS RESEARCH, 2005, 33 (20) :e175.1-e175.9

[5]

Normalization of two-channel microarray experiments: a semiparametric approach [J].

Eckel, JE ;

Gennings, C ;

Therneau, TM ;

Burgoon, LD ;

Boverhof, DR ;

Zacharewski, TR .

BIOINFORMATICS, 2005, 21 (07) :1078-1083

[6]

GAUTIER L, 2005, DESCRIPTION AFFY

[7]

Summaries of affymetrix GeneChip probe level data [J].

Irizarry, RA ;

Bolstad, BM ;

Collin, F ;

Cope, LM ;

Hobbs, B ;

Speed, TP .

NUCLEIC ACIDS RESEARCH, 2003, 31 (04) :e15

[8]

Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection [J].

Li, C ;

Wong, WH .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (01) :31-36

[9]

The effect of GeneChip gene definitions on the microarray study of cancers [J].

Lu, Xuesong ;

Zhang, Xuegong .

BIOESSAYS, 2006, 28 (07) :739-746

[10]

Improved precision and accuracy for microarrays using updated probe set definitions [J].

Sandberg, Rickard ;

Larsson, Ola .

BMC BIOINFORMATICS, 2007, 8 (1)

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