Combining the lattice-sum and reaction-field approaches for evaluating long-range electrostatic interactions in molecular simulations -: art. no. 034107

被引:46
作者
Heinz, TN [1 ]
Hünenberger, PH [1 ]
机构
[1] ETH Honggerberg, Phys Chem Lab, CH-8093 Zurich, Switzerland
关键词
D O I
10.1063/1.1955525
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A new scheme, the lattice-sum-emulated reaction-field (LSERF) method, is presented that combines the lattice-sum (LS) and reaction-field (RF) approaches for evaluating electrostatic interactions in molecular simulations. More precisely, the LSERF scheme emulates a RF calculation (based on an atomic cutoff) via the LS machinery. This is achieved by changing the form of the electrostatic interactions in a standard LS calculation (Coulombic) to the form corresponding to RF electrostatics (Coulombic plus quadratic reaction-field correction term, truncated at the cutoff distance). It is shown (both analytically and numerically) that in the limit of infinite reciprocal-space accuracy, (i) the LSERF scheme with a finite reaction-field cutoff and a given reaction-field permittivity is identical to the RF scheme with the same parameters (and an atomic cutoff), and (ii) the LSERF scheme is identical to the LS scheme in the limit of an infinite reaction-field cutoff, irrespective of the reaction-field permittivity. This new scheme offers two key advantages: (i) from a conceptual point of view, it shows that there is a continuity between the RF and LS schemes and unifies them into a common framework; (ii) from a practical point of view, it allows us to perform RF calculations with arbitrarily large reaction-field cutoff distances for the same computational costs as a corresponding LS calculation. The optimal choice for the cutoff will be the one that achieves the best compromise between artifacts arising from the dielectric heterogeneity of the system (short cutoff) and its artificial periodicity (long cutoff). The implementation of the LSERF method is extremely easy, requiring only very limited modifications of any standard LS code. For practical applications to biomolecular systems, the use of the LSERF scheme with large reaction-field cutoff distances is expected to represent a significant improvement over the current RF simulations involving comparatively much shorter cutoffs. (c) 2005 American Institute of Physics.
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页数:19
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共 166 条
[1]   STATIC DIELECTRIC-PROPERTIES OF THE STOCKMAYER FLUID FROM COMPUTER-SIMULATION [J].
ADAMS, DJ ;
ADAMS, EM .
MOLECULAR PHYSICS, 1981, 42 (04) :907-926
[2]   SIMULATION OF POLAR AND POLARIZABLE FLUIDS [J].
ALDER, BJ ;
POLLOCK, EL .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 1981, 32 :311-329
[3]  
Allen M. P., 2017, Computer Simulation of Liquids, VSecond, DOI [10.1093/oso/9780198803195.001.0001, DOI 10.1093/OSO/9780198803195.001.0001]
[4]   Methodological issues in lipid bilayer simulations [J].
Anézo, C ;
de Vries, AH ;
Höltje, HD ;
Tieleman, DP ;
Marrink, SJ .
JOURNAL OF PHYSICAL CHEMISTRY B, 2003, 107 (35) :9424-9433
[5]   Analysis of electrostatic potential truncation schemes in simulations of polar solvents [J].
Åqvist, J ;
Hansson, T .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (19) :3837-3840
[6]  
Ashbaugh HS, 1999, MOL PHYS, V97, P433, DOI 10.1080/00268979909482843
[7]   Convergence of molecular and macroscopic continuum descriptions of ion hydration [J].
Ashbaugh, HS .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (31) :7235-7238
[8]   Reply to comment on "Electrostatic potentials and free energies of solvation of polar and charged molecules" [J].
Ashbaugh, HS ;
Sakane, S ;
Wood, RH .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (19) :3844-3845
[9]   Effects of long-range electrostatic potential truncation on the free energy of ionic hydration [J].
Ashbaugh, HS ;
Wood, RH .
JOURNAL OF CHEMICAL PHYSICS, 1997, 106 (19) :8135-8139
[10]   A SIMPLE TEST FOR EVALUATING THE TRUNCATION EFFECTS IN SIMULATIONS OF SYSTEMS INVOLVING CHARGED GROUPS [J].
AUFFINGER, P ;
BEVERIDGE, DL .
CHEMICAL PHYSICS LETTERS, 1995, 234 (4-6) :413-415