Correcting for electrostatic cutoffs in free energy simulations: Toward consistency between simulations with different cutoffs

被引:23
作者
Resat, H [1 ]
McCammon, JA
机构
[1] Koc Univ, Fac Arts & Sci, Dept Phys, Istanbul, Turkey
[2] Univ Calif San Diego, Dept Chem & Biochem, La Jolla, CA 92093 USA
[3] Univ Calif San Diego, Dept Pharmacol, La Jolla, CA 92093 USA
关键词
D O I
10.1063/1.476437
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The use of electrostatic cutoffs in calculations of free energy differences by molecular simulations introduces errors, Even though both solute-solvent and solvent-solvent cutoffs are known to create discrepancies, past efforts have mostly been directed toward correcting for the solute-solvent cutoffs. In this work, an approach based on the generalized reaction field formalism is developed to correct for the solvent-solvent cutoff errors as well. It is shown using a series of simulations that when the cutoff lengths are significantly smaller than the half unit cell size, and the solute-solvent cutoff is not much larger than the solvent-solvent cutoff, the new algorithm is able to yield better agreement among simulations employing different truncation lengths. (C) 1998 American Institute of Physics.
引用
收藏
页码:9617 / 9623
页数:7
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