A practical guide to orient yourself in the labyrinth of genome databases

被引:12
作者
Borsani, G
Ballabio, A
Banfi, S
机构
[1] Telethon Inst Genet & Med, TIGEM, Milan, Italy
[2] Univ Vita & Salute San Raffaele, Milan, Italy
关键词
D O I
10.1093/hmg/7.10.1641
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The identification of genes involved in human inherited disorders has been revolutionized by the resources produced by the Human Genome Project, In particular, the generation of >1 000 000 human expressed sequence tags (ESTs) has led to the partial identification of a significant percentage of all human genes. In the next 7 years, we will witness another revolution when sequencing of the human genome is complete. The generation of large amounts of genomic data must be accompanied by parallel efforts to make the information easily accessible. Efforts towards this goal have already started, but retrieval of information from genomic databases still remains an arduous task, With practical examples, we will try to show how the currently available information can be exploited usefully, in particular to identify candidate genes for human diseases.
引用
收藏
页码:1641 / 1648
页数:8
相关论文
共 34 条
  • [1] ADAMS MD, 1995, NATURE, V377, P3
  • [2] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [3] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [4] THE RISE AND FALL OF POSITIONAL CLONING
    BALLABIO, A
    [J]. NATURE GENETICS, 1993, 3 (04) : 277 - 279
  • [5] Identification and mapping of human cDNAs homologous to Drosophila mutant genes through EST database searching
    Banfi, S
    Borsani, G
    Rossi, E
    Bernard, L
    Guffanti, A
    Rubboli, F
    Marchitiello, A
    Giglio, S
    Coluccia, E
    Zollo, M
    Zuffardi, O
    Ballabio, A
    [J]. NATURE GENETICS, 1996, 13 (02) : 167 - 174
  • [6] How to get the best of dbEST
    Banfi, S
    Guffanti, A
    Borsani, G
    [J]. TRENDS IN GENETICS, 1998, 14 (02) : 80 - 81
  • [7] GenBank
    Benson, DA
    Boguski, MS
    Lipman, DJ
    Ostell, J
    Ouellette, BFF
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 1 - 7
  • [8] ESTABLISHING A HUMAN TRANSCRIPT MAP
    BOGUSKI, MS
    SCHULER, GD
    [J]. NATURE GENETICS, 1995, 10 (04) : 369 - 371
  • [9] DBEST - DATABASE FOR EXPRESSED SEQUENCE TAGS
    BOGUSKI, MS
    LOWE, TMJ
    TOLSTOSHEV, CM
    [J]. NATURE GENETICS, 1993, 4 (04) : 332 - 333
  • [10] CHUMAKOV IM, 1995, NATURE, V377, P175