Crystallization and preliminary x-ray diffraction studies of the lipopolysaccharide core biosynthetic enzyme ADP-L-glycero-D-mannoheptose 6-epimerase from Escherichia coli K-12

被引:3
作者
Ding, L
Zhang, YH
Deacon, AM
Ealick, SE
Ni, YS
Sun, P
Coleman, WG
机构
[1] NIDDK, Lab Biochem & Genet, NIH, Bethesda, MD 20892 USA
[2] NIAID, Struct Biol Sect, Off Sci Director, NIH, Bethesda, MD 20892 USA
[3] Cornell Univ, Dept Chem & Chem Engn, Ithaca, NY 14853 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 1999年 / 55卷
关键词
D O I
10.1107/S0907444998014723
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
ADP-L-glycero-D-mannoheptose 6-epimerase is a 240 kDa NAD-dependent nucleotide diphosphosugar epimerase from Escherichia coli K12 which catalyzes the interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. ADP-L-glycero-D-mannoheptose is a required intermediate for lipopolysaccharide inner-core and outer-membrane biosynthesis in several genera of pathogenic and non-pathogenic Gram-negative bacteria. ADP-L-glycero-D-mannoheptose 6-epimerase was overexpressed in E. coli and purified to apparent homogeneity by chromatographic methods. Three crystal forms of the epimerase were obtained by a hanging-drop vapor-diffusion method. A native data set for crystal form III was collected in-house on a Rigaku R-AXIS-IIC image plate at 3.0 Angstrom resolution. The form III crystals belong to the monoclinic space group P2(1). The unit-cell parameters are a = 98.94, b = 110.53, c = 180.68 Angstrom and beta = 90.94 degrees. Our recent results show that these crystals diffract to 2.0 Angstrom resolution at the Cornell High Energy Synchrotron Source. The crystal probably contains six 40 kDa monomers per asymmetric unit, with a corresponding volume per protein mass (V-m) of 4.11 Angstrom(3) Da(-1) and a solvent fraction of 70%.
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页码:685 / 688
页数:4
相关论文
共 13 条
  • [1] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY
    BAILEY, S
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 760 - 763
  • [2] COLEMAN WG, 1992, PSEUDOMONAS : MOLECULAR BIOLOGY AND BIOTECHNOLOGY, P161
  • [3] 2 MUTATIONS WHICH AFFECT THE BARRIER FUNCTION OF THE ESCHERICHIA-COLI K-12 OUTER-MEMBRANE
    COLEMAN, WG
    LEIVE, L
    [J]. JOURNAL OF BACTERIOLOGY, 1979, 139 (03) : 899 - 910
  • [4] COLEMAN WG, 1983, J BIOL CHEM, V258, P1985
  • [5] DING L, 1994, J BIOL CHEM, V269, P24384
  • [6] DOCKBREGEON AC, 1992, CRYSTALLIZATION NUCL, P145
  • [7] GLASER L, 1972, ENZYMES, V6, P355
  • [8] SOLVENT CONTENT OF PROTEIN CRYSTALS
    MATTHEWS, BW
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1968, 33 (02) : 491 - +
  • [9] Processing of X-ray diffraction data collected in oscillation mode
    Otwinowski, Z
    Minor, W
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 : 307 - 326
  • [10] CLONING, EXPRESSION, AND CHARACTERIZATION OF THE ESCHERICHIA-COLI K-12 RFAD GENE
    PEGUES, JC
    CHEN, LS
    GORDON, AW
    DING, L
    COLEMAN, WG
    [J]. JOURNAL OF BACTERIOLOGY, 1990, 172 (08) : 4652 - 4660