Advances in kinetic protein crystallography

被引:105
作者
Bourgeois, D
Royant, A
机构
[1] LCCP, UMR 5075, IBS, F-38027 Grenoble, France
[2] European Synchrotron Radiat Facil, F-38043 Grenoble, France
关键词
D O I
10.1016/j.sbi.2005.08.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Many proteins function in the crystalline state, making crystallography a tool that can address mechanism, as well as structure. By initiating biological turnover in the crystal, transient structural species form, which may be filmed by Laue diffraction or captured by freeze-trapping methods. Laue diffraction has now reached an unprecedented level of sophistication and has found a 'niche of excellence' in the study of cyclic, ultra-fast, light-triggered reactions. Trapping methods, on the other hand, are more generally applicable, but require care to avoid artifacts. New strategies have been developed and difficulties such as radiation damage have received particular attention. Complementary methods mainly UV/visible single-crystal spectroscopy - have proven essential to design, interpret and validate kinetic crystallography experiments.
引用
收藏
页码:538 / 547
页数:10
相关论文
共 60 条
[1]   Direct observation of photolysis-induced tertiary structural changes in hemoglobin [J].
Adachi, S ;
Park, SY ;
Tame, JRH ;
Shiro, Y ;
Shibayama, N .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (12) :7039-7044
[2]   Structure of superoxide reductase bound to ferrocyanide and active site expansion upon X-ray-induced photo-reduction [J].
Adam, V ;
Royant, A ;
Nivière, V ;
Molina-Heredia, FP ;
Bourgeois, D .
STRUCTURE, 2004, 12 (09) :1729-1740
[3]   Structural heterogeneity of cryotrapped intermediates in the bacterial blue light photoreceptor, photoactive yellow protein [J].
Anderson, S ;
Srajer, V ;
Moffat, K .
PHOTOCHEMISTRY AND PHOTOBIOLOGY, 2004, 80 (01) :7-14
[4]   Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein [J].
Anderson, S ;
Srajer, V ;
Pahl, R ;
Rajagopal, S ;
Schotte, F ;
Anfinrud, P ;
Wulff, M ;
Moffat, K .
STRUCTURE, 2004, 12 (06) :1039-1045
[5]   Time-resolved crystallographic studies of light-induced structural changes in the photosynthetic reaction center [J].
Baxter, RHG ;
Ponomarenko, N ;
Srajer, V ;
Pahl, R ;
Moffat, K ;
Norris, JR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (16) :5982-5987
[6]   The catalytic pathway of horseradish peroxidase at high resolution [J].
Berglund, GI ;
Carlsson, GH ;
Smith, AT ;
Szöke, H ;
Henriksen, A ;
Hajdu, J .
NATURE, 2002, 417 (6887) :463-468
[7]   Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography [J].
Bourgeois, D ;
Vallone, B ;
Schotte, F ;
Arcovito, A ;
Miele, AE ;
Sciara, G ;
Wulff, M ;
Anfinrud, P ;
Brunori, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (15) :8704-8709
[8]  
Bourgeois D, 2005, DYNAMIC STUDIES IN BIOLOGY: PHOTOTRIGGERS, PHOTOSWITCHES AND CAGED BIOMOLECULES, P410
[9]   Following ligand binding and ligand reactions in proteins via Raman crystallography [J].
Carey, PR ;
Dong, J .
BIOCHEMISTRY, 2004, 43 (28) :8885-8893
[10]   When X-rays modify the protein structure: radiation damage at work [J].
Carugo, O ;
Carugo, KD .
TRENDS IN BIOCHEMICAL SCIENCES, 2005, 30 (04) :213-219