Genome of Multidrug-Resistant Uropathogenic Escherichia coli Strain NA114 from India

被引：56

作者：

Avasthi, Tiruvayipati Suma ^{[1
]}

Kumar, Narender ^{[1
]}

Baddam, Ramani ^{[1
]}

Hussain, Arif ^{[1
]}

Nandanwar, Nishant ^{[1
]}

Jadhav, Savita ^{[2
]}

Ahmed, Niyaz ^{[1
,3
,4
]}

机构：

[1] Univ Hyderabad, Pathogen Biol Lab, Dept Biotechnol, Sch Life Sci, Hyderabad 500046, Andhra Pradesh, India

[2] Dr DY Patil Univ, Dept Microbiol, Dr DY Patil Med Coll, Pune, Maharashtra, India

[3] Univ Hyderabad, Inst Life Sci, Hyderabad 500046, Andhra Pradesh, India

[4] Univ Malaya, Inst Biol Sci, Kuala Lumpur, Malaysia

来源：

JOURNAL OF BACTERIOLOGY | 2011年 / 193卷 / 16期

关键词：

SEQUENCE; EPIDEMIOLOGY; ALIGNMENT; SOFTWARE; ISLAND; UK;

D O I：

10.1128/JB.05413-11

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Uropathogenic Escherichia coli (UPEC) causes serious infections in people at risk and has a significant environmental prevalence due to contamination by human and animal excreta. In developing countries, UPEC assumes importance in certain dwellings because of poor community/personal hygiene and exposure to contaminated water or soil. We report the complete genome sequence of E. coli strain NA114 from India, a UPEC strain with a multidrug resistance phenotype and the capacity to produce extended-spectrum beta-lactamase. The genome sequence and comparative genomics emanating from it will be significant in understanding the genetic makeup of diverse UPEC strains and in boosting the development of new diagnostics/vaccines.

引用

页码：4272 / 4273

页数：2

共 21 条

[1] Opinion - Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention [J].

Ahmed, Niyaz ;

Dobrindt, Ulrich ;

Hacker, Joerg ;

Hasnain, Seyed E. .

NATURE REVIEWS MICROBIOLOGY, 2008, 6 (05) :387-394

[2] The RAST server: Rapid annotations using subsystems technology [J].

Aziz, Ramy K. ;

Bartels, Daniela ;

Best, Aaron A. ;

DeJongh, Matthew ;

Disz, Terrence ;

Edwards, Robert A. ;

Formsma, Kevin ;

Gerdes, Svetlana ;

Glass, Elizabeth M. ;

Kubal, Michael ;

Meyer, Folker ;

Olsen, Gary J. ;

Olson, Robert ;

Osterman, Andrei L. ;

Overbeek, Ross A. ;

McNeil, Leslie K. ;

Paarmann, Daniel ;

Paczian, Tobias ;

Parrello, Bruce ;

Pusch, Gordon D. ;

Reich, Claudia ;

Stevens, Rick ;

Vassieva, Olga ;

Vonstein, Veronika ;

Wilke, Andreas ;

Zagnitko, Olga .

BMC GENOMICS, 2008, 9 (1)

[3] GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses [J].

Besemer, J ;

Borodovsky, M .

NUCLEIC ACIDS RESEARCH, 2005, 33 :W451-W454

[4] progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement [J].

Darling, Aaron E. ;

Mau, Bob ;

Perna, Nicole T. .

PLOS ONE, 2010, 5 (06)

[5] Mauve: Multiple alignment of conserved genomic sequence with rearrangements [J].

Darling, ACE ;

Mau, B ;

Blattner, FR ;

Perna, NT .

GENOME RESEARCH, 2004, 14 (07) :1394-1403

[6] Improved microbial gene identification with GLIMMER [J].

Delcher, AL ;

Harmon, D ;

Kasif, S ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641

[7]

Guyer DM, 1998, INFECT IMMUN, V66, P4411

[8] Virulence Characteristics and Genetic Affinities of Multiple Drug Resistant Uropathogenic Escherichia coli from a Semi Urban Locality in India [J].

Jadhav, Savita ;

Hussain, Arif ;

Devi, Savita ;

Kumar, Ashutosh ;

Parveen, Sana ;

Gandham, Nageshwari ;

Wieler, Lothar H. ;

Ewers, Christa ;

Ahmed, Niyaz .

PLOS ONE, 2011, 6 (03)

[9] Molecular Epidemiology and Phylogenetic Distribution of the Escherichia coli pks Genomic Island [J].

Johnson, James R. ;

Johnston, Brian ;

Kuskowski, Michael A. ;

Nougayrede, Jean-Philippe ;

Oswald, Eric .

JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (12) :3906-3911

[10] Pathogenic Escherichia coli [J].

Kaper, JB ;

Nataro, JP ;

Mobley, HLT .

NATURE REVIEWS MICROBIOLOGY, 2004, 2 (02) :123-140

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