Genome of Multidrug-Resistant Uropathogenic Escherichia coli Strain NA114 from India

被引:56
作者
Avasthi, Tiruvayipati Suma [1 ]
Kumar, Narender [1 ]
Baddam, Ramani [1 ]
Hussain, Arif [1 ]
Nandanwar, Nishant [1 ]
Jadhav, Savita [2 ]
Ahmed, Niyaz [1 ,3 ,4 ]
机构
[1] Univ Hyderabad, Pathogen Biol Lab, Dept Biotechnol, Sch Life Sci, Hyderabad 500046, Andhra Pradesh, India
[2] Dr DY Patil Univ, Dept Microbiol, Dr DY Patil Med Coll, Pune, Maharashtra, India
[3] Univ Hyderabad, Inst Life Sci, Hyderabad 500046, Andhra Pradesh, India
[4] Univ Malaya, Inst Biol Sci, Kuala Lumpur, Malaysia
关键词
SEQUENCE; EPIDEMIOLOGY; ALIGNMENT; SOFTWARE; ISLAND; UK;
D O I
10.1128/JB.05413-11
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Uropathogenic Escherichia coli (UPEC) causes serious infections in people at risk and has a significant environmental prevalence due to contamination by human and animal excreta. In developing countries, UPEC assumes importance in certain dwellings because of poor community/personal hygiene and exposure to contaminated water or soil. We report the complete genome sequence of E. coli strain NA114 from India, a UPEC strain with a multidrug resistance phenotype and the capacity to produce extended-spectrum beta-lactamase. The genome sequence and comparative genomics emanating from it will be significant in understanding the genetic makeup of diverse UPEC strains and in boosting the development of new diagnostics/vaccines.
引用
收藏
页码:4272 / 4273
页数:2
相关论文
共 21 条
[11]  
Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202, 10.1101/gr.229202. Article published online before March 2002]
[12]   Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study [J].
Kumarasamy, Karthikeyan K. ;
Toleman, Mark A. ;
Walsh, Timothy R. ;
Bagaria, Jay ;
Butt, Fafhana ;
Balakrishnan, Ravikumar ;
Chaudhary, Uma ;
Doumith, Michel ;
Giske, Christian G. ;
Irfan, Seema ;
Krishnan, Padma ;
Kumar, Anil V. ;
Maharjan, Sunil ;
Mushtaq, Shazad ;
Noorie, Tabassum ;
Paterson, David L. ;
Pearson, Andrew ;
Perry, Claire ;
Pike, Rachel ;
Rao, Bhargavi ;
Ray, Ujjwayini ;
Sarma, Jayanta B. ;
Sharma, Madhu ;
Sheridan, Elizabeth ;
Thirunarayan, Mandayam A. ;
Turton, Jane ;
Upadhyay, Supriya ;
Warner, Marina ;
Welfare, William ;
Livermore, David M. ;
Woodford, Neil .
LANCET INFECTIOUS DISEASES, 2010, 10 (09) :597-602
[13]   Versatile and open software for comparing large genomes [J].
Kurtz, S ;
Phillippy, A ;
Delcher, AL ;
Smoot, M ;
Shumway, M ;
Antonescu, C ;
Salzberg, SL .
GENOME BIOLOGY, 2004, 5 (02)
[14]   EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance [J].
Larsen, TS ;
Krogh, A .
BMC BIOINFORMATICS, 2003, 4 (1)
[15]   UK epidemic Escherichia coli strains A-E, with CTX-M-15 β-lactamase, all belong to the international O25:H4-ST131 clone [J].
Lau, Siu Ha ;
Kaufmann, Mary E. ;
Livermore, David M. ;
Woodford, Neil ;
Willshaw, Geraldine A. ;
Cheasty, Tom ;
Stamper, Katie ;
Reddy, Suganya ;
Cheesbrough, John ;
Bolton, Frederick J. ;
Fox, Andrew J. ;
Upton, Mathew .
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2008, 62 (06) :1241-1244
[16]   β-Lactamases- the Threat Renews [J].
Livermore, David M. .
CURRENT PROTEIN & PEPTIDE SCIENCE, 2009, 10 (05) :397-400
[17]   Acquired carbapenemases in Gram-negative bacterial pathogens: detection and surveillance issues [J].
Miriagou, V. ;
Cornaglia, G. ;
Edelstein, M. ;
Galani, I. ;
Giske, C. G. ;
Gniadkowski, M. ;
Malamou-Lada, E. ;
Martinez-Martinez, L. ;
Navarro, F. ;
Nordmann, P. ;
Peixe, L. ;
Pournaras, S. ;
Rossolini, G. M. ;
Tsakris, A. ;
Vatopoulos, A. ;
Canton, R. .
CLINICAL MICROBIOLOGY AND INFECTION, 2010, 16 (02) :112-122
[18]   Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain [J].
Rogers, Benjamin A. ;
Sidjabat, Hanna E. ;
Paterson, David L. .
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2011, 66 (01) :1-14
[19]   Artemis: sequence visualization and annotation [J].
Rutherford, K ;
Parkhill, J ;
Crook, J ;
Horsnell, T ;
Rice, P ;
Rajandream, MA ;
Barrell, B .
BIOINFORMATICS, 2000, 16 (10) :944-945
[20]   Complete Genome Sequence of the Wild-Type Commensal Escherichia coli Strain SE15, Belonging to Phylogenetic Group B2 [J].
Toh, Hidehiro ;
Oshima, Kenshiro ;
Toyoda, Atsushi ;
Ogura, Yoshitoshi ;
Ooka, Tadasuke ;
Sasamoto, Hiroyuki ;
Park, Sang-Hee ;
Iyoda, Sunao ;
Kurokawa, Ken ;
Morita, Hidetoshi ;
Itoh, Kikuji ;
Taylor, Todd D. ;
Hayashi, Tetsuya ;
Hattori, Masahira .
JOURNAL OF BACTERIOLOGY, 2010, 192 (04) :1165-1166