Cytoscape Web: an interactive web-based network browser

被引:576
作者
Lopes, Christian T. [1 ]
Franz, Max [1 ]
Kazi, Farzana [1 ]
Donaldson, Sylva L. [1 ]
Morris, Quaid [1 ]
Bader, Gary D. [1 ]
机构
[1] Univ Toronto, Banting & Best Dept Med Res, Donnelly Ctr Cellular & Biomol Res, Toronto, ON M5S 3E1, Canada
基金
美国国家卫生研究院;
关键词
D O I
10.1093/bioinformatics/btq430
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Cytoscape Web is a web-based network visualization tool-modeled after Cytoscape-which is open source, interactive, customizable and easily integrated into web sites. Multiple file exchange formats can be used to load data into Cytoscape Web, including GraphML, XGMML and SIF.
引用
收藏
页码:2347 / 2348
页数:2
相关论文
共 6 条
[1]   Medusa: a simple tool for interaction graph analysis [J].
Hooper, SD ;
Bork, P .
BIOINFORMATICS, 2005, 21 (24) :4432-4433
[2]   STRING 8-a global view on proteins and their functional interactions in 630 organisms [J].
Jensen, Lars J. ;
Kuhn, Michael ;
Stark, Manuel ;
Chaffron, Samuel ;
Creevey, Chris ;
Muller, Jean ;
Doerks, Tobias ;
Julien, Philippe ;
Roth, Alexander ;
Simonovic, Milan ;
Bork, Peer ;
von Mering, Christian .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D412-D416
[3]   jS']jSquid: a Java']Java applet for graphical on-line network exploration [J].
Klammer, Martin ;
Roopra, Sanjit ;
Sonnhammer, Erik L. L. .
BIOINFORMATICS, 2008, 24 (12) :1467-1468
[4]   iRefIndex: A consolidated protein interaction database with provenance [J].
Razick, Sabry ;
Magklaras, George ;
Donaldson, Ian M. .
BMC BIOINFORMATICS, 2008, 9 (1)
[5]   Cytoscape: A software environment for integrated models of biomolecular interaction networks [J].
Shannon, P ;
Markiel, A ;
Ozier, O ;
Baliga, NS ;
Wang, JT ;
Ramage, D ;
Amin, N ;
Schwikowski, B ;
Ideker, T .
GENOME RESEARCH, 2003, 13 (11) :2498-2504
[6]   The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function [J].
Warde-Farley, David ;
Donaldson, Sylva L. ;
Comes, Ovi ;
Zuberi, Khalid ;
Badrawi, Rashad ;
Chao, Pauline ;
Franz, Max ;
Grouios, Chris ;
Kazi, Farzana ;
Lopes, Christian Tannus ;
Maitland, Anson ;
Mostafavi, Sara ;
Montojo, Jason ;
Shao, Quentin ;
Wright, George ;
Bader, Gary D. ;
Morris, Quaid .
NUCLEIC ACIDS RESEARCH, 2010, 38 :W214-W220