Oxidative decarboxylation of 6-phosphogluconate by 6-phosphogluconate dehydrogenase proceeds by a stepwise mechanism with NADP and APADP as oxidants

被引:30
作者
Hwang, CC
Berdis, AJ
Karsten, WE
Cleland, WW
Cook, PF
机构
[1] Univ Oklahoma, Dept Chem & Biochem, Norman, OK 73019 USA
[2] Univ Wisconsin, Inst Enzyme Res, Madison, WI 53705 USA
关键词
D O I
10.1021/bi980611s
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Primary kinetic deuterium, C-13, and multiple deuterium/C-13-isotope effects on V/K-6PG have been measured for the Candida utilis (cu) and sheep liver (sl) 6-phosphogluconate dehydrogenases (6PGDH). With NADP as the dinucleotide substrate, the following values of (D)(V/K-6PG), (13)(V/K-6PG)(H), and (13)(V/K-6PG)(D) were measured at pH 8 for cu6PGDH (sl6PGDH): 1.57 +/- 0.08 (1.87 +/- 0.10), 1.0209 +/- 0.0005 (1.0059 +/- 0.000 10), 1.0158 +/- 0.0001 (1.0036 +/- 0.0008). With APADP as the dinucleotide substrate, values for the above isotope effects at pH 8 are as follows: 2.98 +/- 0.08 (2.47 +/- 0.06), 1.0106 +/- 0.0002 (1.0086 +/- 0.000 09), and 0.9934 +/- 0.0003 (0.9950 +/- 0.0003). Results indicate the oxidative decarboxylation of 6PG to the 1,2-enediol of ribulose 5-phosphate proceeds via a stepwise mechanism with hydride transfer preceding decarboxylation in all cases. The inverse C-13-isotope effect observed with APADP and 6PG-3d may reflect a preequlibrium isotope effect on the binding of 6PG preceding hydride transfer. Deuterium-isotope effects on V, V/K-NADP, and V/K-6PG are identical at all pHs and for both enzymes. The primary deuterium-isotope effect on V/K-6PG for both enzymes is constant at pH values below the pK in the pH profile for V/K-6PG, and decreases as the pH increases. Data suggest the development of rate limitation by a step or steps other than the hydride-transfer step as the pH is increased.
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页码:12596 / 12602
页数:7
相关论文
共 35 条
[1]   CRYSTALLOGRAPHIC STUDY OF COENZYME, COENZYME ANALOG AND SUBSTRATE-BINDING IN 6-PHOSPHOGLUCONATE DEHYDROGENASE - IMPLICATIONS FOR NADP SPECIFICITY AND THE ENZYME MECHANISM [J].
ADAMS, MJ ;
ELLIS, GH ;
GOVER, S ;
NAYLOR, CE ;
PHILLIPS, C .
STRUCTURE, 1994, 2 (07) :651-668
[2]   CHEMICAL MECHANISM OF 6-PHOSPHOGLUCONATE DEHYDROGENASE FROM CANDIDA-UTILIS FROM PH STUDIES [J].
BERDIS, AJ ;
COOK, PF .
BIOCHEMISTRY, 1993, 32 (08) :2041-2046
[3]   OVERALL KINETIC MECHANISM OF 6-PHOSPHOGLUCONATE DEHYDROGENASE FROM CANDIDA-UTILIS [J].
BERDIS, AJ ;
COOK, PF .
BIOCHEMISTRY, 1993, 32 (08) :2036-2040
[4]   Cloning, expression, purification, and characterization of the 6-phosphogluconate dehydrogenase from sheep liver [J].
Chooback, L ;
Price, NE ;
Karsten, WE ;
Nelson, J ;
Sundstrom, P ;
Cook, PF .
PROTEIN EXPRESSION AND PURIFICATION, 1998, 13 (02) :251-258
[5]  
Cleland W W, 1979, Methods Enzymol, V63, P103
[6]   PH VARIATION OF ISOTOPE EFFECTS IN ENZYME-CATALYZED REACTIONS .2. ISOTOPE-DEPENDENT STEP NOT PH DEPENDENT - KINETIC MECHANISM OF ALCOHOL-DEHYDROGENASE [J].
COOK, PF ;
CLELAND, WW .
BIOCHEMISTRY, 1981, 20 (07) :1805-1816
[8]   Determination of the chemical mechanism of malic enzyme by isotope effects [J].
Edens, WA ;
Urbauer, JL ;
Cleland, WW .
BIOCHEMISTRY, 1997, 36 (05) :1141-1147
[9]   ISOTOPE EFFECT STUDIES OF CHICKEN LIVER NADP MALIC ENZYME - ROLE OF THE METAL-ION AND VISCOSITY DEPENDENCE [J].
GRISSOM, CB ;
CLELAND, WW .
BIOCHEMISTRY, 1988, 27 (08) :2927-2934
[10]   USE OF MULTIPLE ISOTOPE EFFECTS TO DETERMINE ENZYME MECHANISMS AND INTRINSIC ISOTOPE EFFECTS - MALIC ENZYME AND GLUCOSE-6-PHOSPHATE-DEHYDROGENASE [J].
HERMES, JD ;
ROESKE, CA ;
OLEARY, MH ;
CLELAND, WW .
BIOCHEMISTRY, 1982, 21 (20) :5106-5114