NMR methods for the determination of protein-ligand dissociation constants

被引:311
作者
Fielding, Lee [1 ]
机构
[1] Organon Biosci, Newhouse ML1 5SH, Scotland
关键词
NMR spectroscopy; protein-ligand interactions; binding affinity; quantitative methods; drug discovery;
D O I
10.1016/j.pnmrs.2007.04.001
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The use of NMR to determine quantitatively the dissociation constants of protein-ligand complexes is firmly established. The opportunity to observe cleanly the species of interest with high sensitivity and often with no additional chemical manipulation has resulted in the accumulation of huge experience with NMR. The classical NMR approach to the determination of stoichiometry is the method of continuous variations. An advantage of using NMR to measure protein-ligand interaction is that the NMR method extends the range of measurable interactions into the mM range, a region not well covered by traditional biochemical binding assays. Competition binding and CP-MAS approaches, have resulted in novel, sensitive and specific NMR methods to measure KD that have moved far from the original linewidth and chemical shift perturbation approaches.
引用
收藏
页码:219 / 242
页数:24
相关论文
共 121 条
[1]   NMR and modeling studies of protein-carbohydrate interactions:: Synthesis, three-dimensional structure, and recognition properties of a minimum hevein domain with binding affinity for chitooligosaccharides [J].
Aboitiz, N ;
Vila-Perelló, M ;
Groves, P ;
Asensio, JL ;
Andreu, D ;
Cañada, FJ ;
Jiménez-Barbero, J .
CHEMBIOCHEM, 2004, 5 (09) :1245-1255
[2]   NMR investigations of protein-carbohydrate interactions:: refined three-dimensional structure of the complex between hevein and methyl β-chitobioside [J].
Asensio, JL ;
Cañada, FJ ;
Bruix, M ;
González, C ;
Khiar, N ;
Rodríguez-Romero, A ;
Jiménez-Barbero, J .
GLYCOBIOLOGY, 1998, 8 (06) :569-577
[3]  
ASENSIO JL, 1995, EUR J BIOCHEM, V230, P621
[4]  
Asensio JL, 2000, PROTEINS, V40, P218, DOI 10.1002/(SICI)1097-0134(20000801)40:2<218::AID-PROT50>3.0.CO
[5]  
2-P
[6]  
Barrans R. E., 1994, SUPRAMOL CHEM, V4, P121
[7]   MEASURING RELATIVE ACETYLCHOLINE-RECEPTOR AGONIST BINDING BY SELECTIVE PROTON NUCLEAR MAGNETIC-RESONANCE RELAXATION EXPERIMENTS [J].
BEHLING, RW ;
YAMANE, T ;
NAVON, G ;
SAMMON, MJ ;
JELINSKI, LW .
BIOPHYSICAL JOURNAL, 1988, 53 (06) :947-954
[8]   Characterization of ligand binding to the bifunctional key enzyme in the sialic acid biosynthesis by NMR - II. Investigation of the ManNAc kinase functionality [J].
Benie, AJ ;
Blume, A ;
Schmidt, RR ;
Reutter, W ;
Hinderlich, S ;
Peters, T .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (53) :55722-55727
[9]   Characterization of ligand binding to the bifunctional key enzyme in the sialic acid biosynthesis by NMR - I. Investigation of the UDP-GlcNAc 2-epimerase functionality [J].
Blume, A ;
Benie, AJ ;
Stolz, F ;
Schmidt, RR ;
Reutter, W ;
Hinderlich, S ;
Peters, T .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (53) :55715-55721
[10]   Novel inhibitors of DNA gyrase: 3D structure based biased needle screening, hit validation by biophysical methods, and 3D guided optimization. A promising alternative to random screening [J].
Boehm, HJ ;
Boehringer, M ;
Bur, D ;
Gmuender, H ;
Huber, W ;
Klaus, W ;
Kostrewa, D ;
Kuehne, H ;
Luebbers, T ;
Meunier-Keller, N .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (14) :2664-2674