Activity-Based Chemical Proteomics Accelerates Inhibitor Development for Deubiquitylating Enzymes

被引:365
作者
Altun, Mikael [1 ]
Kramer, Holger B. [1 ]
Willems, Lianne I. [1 ]
McDermott, Jeffrey L. [3 ]
Leach, Craig A. [3 ]
Goldenberg, Seth J. [3 ]
Kumar, K. G. Suresh [3 ]
Konietzny, Rebecca [1 ]
Fischer, Roman [1 ]
Kogan, Edward [1 ]
Mackeen, Mukram M. [1 ]
McGouran, Joanna [1 ]
Khoronenkova, Svetlana V. [2 ]
Parsons, Jason L. [2 ]
Dianov, Grigory L. [2 ]
Nicholson, Benjamin [3 ]
Kessler, Benedikt M. [1 ]
机构
[1] Univ Oxford, Nuffield Dept Med, Oxford OX3 7DQ, England
[2] Univ Oxford, Gray Inst Radiat Oncol & Biol, Dept Oncol, Oxford OX3 7DQ, England
[3] Progenra Inc, Malvern, PA 19355 USA
来源
CHEMISTRY & BIOLOGY | 2011年 / 18卷 / 11期
基金
瑞典研究理事会;
关键词
FUNCTIONAL PROTEOMICS; UBIQUITIN; HAUSP; P53; DEUBIQUITINATION; CHEMISTRY; CANCER; IDENTIFICATION; ACTIVATION; STABILIZES;
D O I
10.1016/j.chembiol.2011.08.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
Converting lead compounds into drug candidates is a crucial step in drug development, requiring early assessment of potency, selectivity, and off-target effects. WE: have utilized activity-based chemical proteomics to determine the potency and selectivity of deubiquitylating enzyme (DUB) inhibitors in cell culture models. Importantly, we characterized the small molecule PR-619 as a broad-range DUB inhibitor, and P22077 as a USP7 inhibitor with potential for further development as a chemotherapeutic agent in cancer therapy. A striking accumulation of polyubiquitylated proteins was observed after both selective and general inhibition of cellular DUB activity without direct impairment of proteasomal proteolysis. The repertoire of ubiquitylated substrates was analyzed by tandem mass spectrometry, identifying distinct subsets for general or specific inhibition of DUBs. This enabled identification of previously unknown functional links between USP7 and enzymes involved in DNA repair.
引用
收藏
页码:1401 / 1412
页数:12
相关论文
共 61 条
[1]
Muscle Wasting in Aged, Sarcopenic Rats Is Associated with Enhanced Activity of the Ubiquitin Proteasome Pathway [J].
Altun, Mikael ;
Besche, Henrike C. ;
Overkleeft, Herman S. ;
Piccirillo, Rosanna ;
Edelmann, Mariola J. ;
Kessler, Benedikt M. ;
Goldberg, Alfred L. ;
Ulfhake, Brun .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (51) :39597-39608
[2]
Ubiquitin-like protein conjugation and the ubiquitin-proteasome system as drug targets [J].
Bedford, Lynn ;
Lowe, James ;
Dick, Lawrence R. ;
Mayer, R. John ;
Brownell, James E. .
NATURE REVIEWS DRUG DISCOVERY, 2011, 10 (01) :29-46
[3]
Resonance-stabilized 1,2,3-dithiazolo-1,2,3-dithiazolyls as neutral π-radical conductors [J].
Beer, L ;
Brusso, JL ;
Cordes, AW ;
Haddon, RC ;
Itkis, ME ;
Kirschbaum, K ;
MacGregor, DS ;
Oakley, RT ;
Pinkerton, AA ;
Reed, RW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (32) :9498-9509
[4]
Substrate binding and sequence preference of the proteasome revealed by active-site-directed affinity probes [J].
Bogyo, M ;
Shin, S ;
McMaster, JS ;
Ploegh, HL .
CHEMISTRY & BIOLOGY, 1998, 5 (06) :307-320
[5]
Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme [J].
Borodovsky, A ;
Ovaa, H ;
Kolli, N ;
Gan-Erdene, T ;
Wilkinson, KD ;
Ploegh, HL ;
Kessler, BM .
CHEMISTRY & BIOLOGY, 2002, 9 (10) :1149-1159
[6]
A novel active site-directed probe specific for deubiquitylating enzymes reveals proteasome association of USP14 [J].
Borodovsky, A ;
Kessler, BM ;
Casagrande, R ;
Overkleeft, HS ;
Wilkinson, KD ;
Ploegh, HL .
EMBO JOURNAL, 2001, 20 (18) :5187-5196
[7]
The p53-Mdm2-HAUSP complex is involved in p53 stabilization by HAUSP [J].
Brooks, C. L. ;
Li, M. ;
Hu, M. ;
Shi, Y. ;
Gu, W. .
ONCOGENE, 2007, 26 (51) :7262-7266
[8]
Cheon KW, 2006, INT J ONCOL, V28, P1209
[9]
The therapeutic potential of deubiquitinating enzyme inhibitors [J].
Colland, Frederic .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2010, 38 :137-143
[10]
Small-molecule inhibitor of USP7/HAUSP ubiquitin protease stabilizes and activates p53 in cells [J].
Colland, Frederic ;
Formstecher, Etienne ;
Jacq, Xavier ;
Reverdy, Celine ;
Planquette, Cecile ;
Conrath, Susan ;
Trouplin, Virginie ;
Bianchi, Julie ;
Aushev, Vasily N. ;
Camonis, Jacques ;
Calabrese, Alessandra ;
Borg-Capra, Catherine ;
Sippl, Wolfgang ;
Collura, Vincent ;
Boissy, Guillaume ;
Rain, Jean-Christophe ;
Guedat, Philippe ;
Delansorne, Remi ;
Daviet, Laurent .
MOLECULAR CANCER THERAPEUTICS, 2009, 8 (08) :2286-2295