Genomic perspectives in microbial oceanography

被引:195
作者
DeLong, EF [1 ]
Karl, DM
机构
[1] MIT 48 427, Dept Civil & Environm Engn, Cambridge, MA 02139 USA
[2] MIT 48 427, Div Biol Engn, Cambridge, MA 02139 USA
[3] Univ Hawaii, Sch Ocean & Earth Sci & Technol, Honolulu, HI 96822 USA
基金
美国国家科学基金会;
关键词
D O I
10.1038/nature04157
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 [理学]; 0710 [生物学]; 09 [农学];
摘要
The global ocean is an integrated living system where energy and matter transformations are governed by interdependent physical, chemical and biotic processes. Although the fundamentals of ocean physics and chemistry are well established, comprehensive approaches to describing and interpreting oceanic microbial diversity and processes are only now emerging. In particular, the application of genomics to problems in microbial oceanography is significantly expanding our understanding of marine microbial evolution, metabolism and ecology. Integration of these new genome-enabled insights into the broader framework of ocean science represents one of the great contemporary challenges for microbial oceanographers.
引用
收藏
页码:336 / 342
页数:7
相关论文
共 52 条
[1]
[Anonymous], 2002, MICROBIAL ECOLOGY GE
[2]
The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism [J].
Armbrust, EV ;
Berges, JA ;
Bowler, C ;
Green, BR ;
Martinez, D ;
Putnam, NH ;
Zhou, SG ;
Allen, AE ;
Apt, KE ;
Bechner, M ;
Brzezinski, MA ;
Chaal, BK ;
Chiovitti, A ;
Davis, AK ;
Demarest, MS ;
Detter, JC ;
Glavina, T ;
Goodstein, D ;
Hadi, MZ ;
Hellsten, U ;
Hildebrand, M ;
Jenkins, BD ;
Jurka, J ;
Kapitonov, VV ;
Kröger, N ;
Lau, WWY ;
Lane, TW ;
Larimer, FW ;
Lippmeier, JC ;
Lucas, S ;
Medina, M ;
Montsant, A ;
Obornik, M ;
Parker, MS ;
Palenik, B ;
Pazour, GJ ;
Richardson, PM ;
Rynearson, TA ;
Saito, MA ;
Schwartz, DC ;
Thamatrakoln, K ;
Valentin, K ;
Vardi, A ;
Wilkerson, FP ;
Rokhsar, DS .
SCIENCE, 2004, 306 (5693) :79-86
[3]
THE ECOLOGICAL ROLE OF WATER-COLUMN MICROBES IN THE SEA [J].
AZAM, F ;
FENCHEL, T ;
FIELD, JG ;
GRAY, JS ;
MEYERREIL, LA ;
THINGSTAD, F .
MARINE ECOLOGY PROGRESS SERIES, 1983, 10 (03) :257-263
[4]
Bacterial rhodopsin:: Evidence for a new type of phototrophy in the sea [J].
Béjà, O ;
Aravind, L ;
Koonin, EV ;
Suzuki, MT ;
Hadd, A ;
Nguyen, LP ;
Jovanovich, S ;
Gates, CM ;
Feldman, RA ;
Spudich, JL ;
Spudich, EN ;
DeLong, EF .
SCIENCE, 2000, 289 (5486) :1902-1906
[5]
Proteorhodopsin phototrophy in the ocean [J].
Béjà, O ;
Spudich, EN ;
Spudich, JL ;
Leclerc, M ;
DeLong, EF .
NATURE, 2001, 411 (6839) :786-789
[6]
HIGH ABUNDANCE OF VIRUSES FOUND IN AQUATIC ENVIRONMENTS [J].
BERGH, O ;
BORSHEIM, KY ;
BRATBAK, G ;
HELDAL, M .
NATURE, 1989, 340 (6233) :467-468
[7]
A NOVEL FREE-LIVING PROCHLOROPHYTE ABUNDANT IN THE OCEANIC EUPHOTIC ZONE [J].
CHISHOLM, SW ;
OLSON, RJ ;
ZETTLER, ER ;
GOERICKE, R ;
WATERBURY, JB ;
WELSCHMEYER, NA .
NATURE, 1988, 334 (6180) :340-343
[8]
SUBMARINE THERMAL SPRINGS ON THE GALAPAGOS RIFT [J].
CORLISS, JB ;
DYMOND, J ;
GORDON, LI ;
EDMOND, JM ;
HERZEN, RPV ;
BALLARD, RD ;
GREEN, K ;
WILLIAMS, D ;
BAINBRIDGE, A ;
CRANE, K ;
VANANDEL, TH .
SCIENCE, 1979, 203 (4385) :1073-1083
[9]
Microbial community genomics in the ocean [J].
DeLong, EE .
NATURE REVIEWS MICROBIOLOGY, 2005, 3 (06) :459-469
[10]
PHYLOGENETIC STAINS - RIBOSOMAL RNA-BASED PROBES FOR THE IDENTIFICATION OF SINGLE CELLS [J].
DELONG, EF ;
WICKHAM, GS ;
PACE, NR .
SCIENCE, 1989, 243 (4896) :1360-1363