Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting

被引:67
作者
Young, BA
Gruber, TM
Gross, CA [1 ]
机构
[1] Univ Calif San Francisco, Dept Stomatol, San Francisco, CA 94143 USA
[2] Univ Calif San Francisco, Dept Microbiol & Immunol, San Francisco, CA 94143 USA
关键词
D O I
10.1126/science.1092462
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We determined the minimal portion of Escherichia coli RNA polymerase ( RNAP) holoenzyme able to accomplish promoter melting, the crucial step in transcription initiation that provides RNAP access to the template strand. Upon duplex DNA binding, the N terminus of the beta' subunit ( amino acids 1 to 314) and amino acids 94 to 507 of the sigma subunit, together comprising less than one-fifth of RNAP holoenzyme, were able to melt an extended - 10 promoter in a reaction remarkably similar to that of authentic holoenzyme. Our results support the model that capture of nontemplate bases extruded from the DNA helix underlies the melting process.
引用
收藏
页码:1382 / 1384
页数:3
相关论文
共 20 条
[1]   Structure of the bacterial RNA polymerase promoter specificity σ subunit [J].
Campbell, EA ;
Muzzin, O ;
Chlenov, M ;
Sun, JL ;
Olson, CA ;
Weinman, O ;
Trester-Zedlitz, ML ;
Darst, SA .
MOLECULAR CELL, 2002, 9 (03) :527-539
[2]   RNA polymerase II/TFIIF structure and conserved organization of the initiation complex [J].
Chung, WH ;
Craighead, JL ;
Chang, WH ;
Ezeokonkwo, C ;
Bareket-Samish, A ;
Kornberg, RD ;
Asturias, FJ .
MOLECULAR CELL, 2003, 12 (04) :1003-1013
[3]  
Dombroski AJ, 1997, J BIOL CHEM, V272, P3487
[4]   AMINO-TERMINAL AMINO-ACIDS MODULATE SIGMA-FACTOR DNA-BINDING ACTIVITY [J].
DOMBROSKI, AJ ;
WALTER, WA ;
GROSS, CA .
GENES & DEVELOPMENT, 1993, 7 (12A) :2446-2455
[5]   RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II [J].
Ebright, RH .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 304 (05) :687-698
[6]   Function of the bacterial TATAAT-10 element as single-stranded DNA during RNA polymerase isomerization [J].
Fenton, MS ;
Gralla, JD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (16) :9020-9025
[7]   The functional and regulatory roles of sigma factors in transcription [J].
Gross, CA ;
Chan, C ;
Dombroski, A ;
Gruber, T ;
Sharp, M ;
Tupy, J ;
Young, B .
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1998, 63 :141-155
[8]   Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners [J].
Helmann, JD ;
deHaseth, PL .
BIOCHEMISTRY, 1999, 38 (19) :5959-5967
[9]   STRUCTURE AND FUNCTION OF BACTERIAL SIGMA FACTORS [J].
HELMANN, JD ;
CHAMBERLIN, MJ .
ANNUAL REVIEW OF BIOCHEMISTRY, 1988, 57 :839-872
[10]  
Lilley, 1997, NUCL ACIDS MOL BIOL, P41, DOI 10.1007/978-3-642-60691-5_4