Genomes, phylogeny, and evolutionary systems biology

被引：44

作者：

Medina, M ^{[1
]}

机构：

[1] Dept Energy Joint Genome Inst, Dept Evolutionary Genom, Walnut Creek, CA 94598 USA

来源：

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | 2005年 / 102卷

关键词：

postgenomics; eukaryotic genomics; network evolution;

D O I：

10.1073/pnas.0501984102

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

With the completion of the human genome and the growing number of diverse genomes being sequenced, a new age of evolutionary research is currently taking shape. The myriad of technological breakthroughs in biology that are leading to the unification of broad scientific fields such as molecular biology, biochemistry, physics, mathematics, and computer science are now known as systems biology. Here, I present an overview, with an emphasis on eukaryotes, of how the postgenomics era is adopting comparative approaches that go beyond comparisons among model organisms to shape the nascent field of evolutionary systems biology.

引用

页码：6630 / 6635

页数：6

共 84 条

[1] Animal evolution - the end of the intermediate taxa? [J].

Adoutte, A ;

Balavoine, G ;

Lartillot, N ;

de Rosa, R .

TRENDS IN GENETICS, 1999, 15 (03) :104-108

[2]

AMARALZETTLER LA, 2001, J EUKARYOT MICROBIOL, V48, P293

[3] Recycled plastids: a 'green movement' in eukaryotic evolution [J].

Archibald, JM ;

Keeling, PJ .

TRENDS IN GENETICS, 2002, 18 (11) :577-584

[4] The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism [J].

Armbrust, EV ;

Berges, JA ;

Bowler, C ;

Green, BR ;

Martinez, D ;

Putnam, NH ;

Zhou, SG ;

Allen, AE ;

Apt, KE ;

Bechner, M ;

Brzezinski, MA ;

Chaal, BK ;

Chiovitti, A ;

Davis, AK ;

Demarest, MS ;

Detter, JC ;

Glavina, T ;

Goodstein, D ;

Hadi, MZ ;

Hellsten, U ;

Hildebrand, M ;

Jenkins, BD ;

Jurka, J ;

Kapitonov, VV ;

Kröger, N ;

Lau, WWY ;

Lane, TW ;

Larimer, FW ;

Lippmeier, JC ;

Lucas, S ;

Medina, M ;

Montsant, A ;

Obornik, M ;

Parker, MS ;

Palenik, B ;

Pazour, GJ ;

Richardson, PM ;

Rynearson, TA ;

Saito, MA ;

Schwartz, DC ;

Thamatrakoln, K ;

Valentin, K ;

Vardi, A ;

Wilkerson, FP ;

Rokhsar, DS .

SCIENCE, 2004, 306 (5693) :79-86

[5] Network biology:: Understanding the cell's functional organization [J].

Barabási, AL ;

Oltvai, ZN .

NATURE REVIEWS GENETICS, 2004, 5 (02) :101-U15

[6] Development and ecology in the time of systems biology [J].

Benfey, PN .

DEVELOPMENTAL CELL, 2004, 7 (03) :329-330

[7] DATING THE EVOLUTIONARY RADIATIONS OF THE TRUE FUNGI [J].

BERBEE, ML ;

TAYLOR, JW .

CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, 1993, 71 (08) :1114-1127

[8] Similarities and differences in genome-wide expression data of six organisms [J].

Bergmann, S ;

Ihmels, J ;

Barkai, N .

PLOS BIOLOGY, 2004, 2 (01) :85-93

[9] Computational identification of developmental enhancers:: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura -: art. no. R61 [J].

Berman, BP ;

Pfeiffer, BD ;

Laverty, TR ;

Salzberg, SL ;

Rubin, GM ;

Eisen, MB ;

Celniker, SE .

GENOME BIOLOGY, 2004, 5 (09)

[10] Photosynthetic eukaryotes unite: endosymbiosis connects the dots [J].

Bhattacharya, D ;

Yoon, HS ;

Hackett, JD .

BIOESSAYS, 2004, 26 (01) :50-60

← 1 2 3 4 5 6 7 8 9 →