Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

被引:296
作者
Gromadski, KB [1 ]
Rodnina, MV [1 ]
机构
[1] Univ Witten Herdecke, Inst Phys Biochem, D-58448 Witten, Germany
关键词
D O I
10.1016/S1097-2765(04)00005-X
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The ribosome selects aminoacyl-tRNA (aa-tRNA) matching to the mRNA codon from the bulk of nonmatching aa-tRNAs in two consecutive selection steps, initial selection and proofreading. Here we report the kinetic analysis of selection taking place under conditions where the overall selectivity was close to values observed in vivo and initial selection and proofreading contributed about equally. Comparison of the rate constants shows that the 350-fold difference in stabilities of cognate and near-cognate codon-anticodon complexes is not used for tRNA selection due to high rate of GTP hydrolysis in the cognate complex. tRNA selection at the initial selection step is entirely kinetically controlled and is due to much faster (650-fold) GTP hydrolysis of cognate compared to near-cognate substrate.
引用
收藏
页码:191 / 200
页数:10
相关论文
共 47 条
[1]   Specificity of RNA-RNA helix recognition [J].
Battle, DJ ;
Doudna, JA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (18) :11676-11681
[2]   The G2447A mutation does not affect ionization of a ribosomal group taking part in peptide bond formation [J].
Beringer, M ;
Adio, S ;
Wintermeyer, W ;
Rodnina, M .
RNA, 2003, 9 (08) :919-922
[3]   MUTATIONS IN 23-S RIBOSOMAL-RNA PERTURB TRANSFER-RNA SELECTION AND CAN LEAD TO STREPTOMYCIN DEPENDENCE [J].
BILGIN, N ;
EHRENBERG, M .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 235 (03) :813-824
[4]   RIBOSOMAL-RNA AND PROTEIN MUTANTS RESISTANT TO SPECTINOMYCIN [J].
BILGIN, N ;
RICHTER, AA ;
EHRENBERG, M ;
DAHLBERG, AE ;
KURLAND, CG .
EMBO JOURNAL, 1990, 9 (03) :735-739
[5]   CODON-SPECIFIC MISSENSE ERRORS INVIVO [J].
BOUADLOUN, F ;
DONNER, D ;
KURLAND, CG .
EMBO JOURNAL, 1983, 2 (08) :1351-1356
[6]   SELECTION OF THE MESSENGER-RNA TRANSLATION INITIATION REGION BY ESCHERICHIA-COLI RIBOSOMES [J].
CALOGERO, RA ;
PON, CL ;
CANONACO, MA ;
GUALERZI, CO .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (17) :6427-6431
[7]   PARTITION ANALYSIS AND CONCEPT OF NET RATE CONSTANTS AS TOOLS IN ENZYME-KINETICS [J].
CLELAND, WW .
BIOCHEMISTRY, 1975, 14 (14) :3220-3224
[8]   Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome [J].
Daviter, T ;
Wieden, HJ ;
Rodnina, MV .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 332 (03) :689-699
[9]  
DIX DB, 1990, RIBOSOME, P527
[10]   MISTRANSLATION IN ESCHERICHIA-COLI [J].
EDELMANN, P ;
GALLANT, J .
CELL, 1977, 10 (01) :131-137