Registration of the expression patterns of Drosophila segmentation genes by two independent methods

被引:95
作者
Myasnikova, E
Samsonova, A
Kozlov, K
Samsonova, M
Reinitz, J
机构
[1] CUNY Mt Sinai Sch Med, Dept Mol Biol & Biochem, New York, NY 10029 USA
[2] Inst High Performance Comp & Data Bases, St Petersburg 198005, Russia
关键词
D O I
10.1093/bioinformatics/17.1.3
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: To construct an integrated map of Drosophila segmentation gene expression from partial data taken from individual embryos. Results: Spline and wavelet based registration techniques were developed to register Drosophila segmentation gene expression data. As ground control points for registration we used the locations of extrema on gene expression patterns, represented in 1D. The registration method was characterized by unprecedented high accuracy. A method for constructing the integrated pattern of gene expression at cellular resolution was designed. These patterns were constructed for 9 segmentation genes belonging to gap and pair-rule classes.
引用
收藏
页码:3 / 12
页数:10
相关论文
共 20 条
[1]  
AKAM M, 1987, DEVELOPMENT, V101, P1
[2]   A SURVEY OF IMAGE REGISTRATION TECHNIQUES [J].
BROWN, LG .
COMPUTING SURVEYS, 1992, 24 (04) :325-376
[3]  
FOE VE, 1983, J CELL SCI, V61, P31
[4]   COMPLEMENTARY PATTERNS OF EVEN-SKIPPED AND FUSHI-TARAZU EXPRESSION INVOLVE THEIR DIFFERENTIAL REGULATION BY A COMMON SET OF SEGMENTATION GENES IN DROSOPHILA [J].
FRASCH, M ;
LEVINE, M .
GENES & DEVELOPMENT, 1987, 1 (09) :981-995
[5]  
Hewitt GF, 1999, DEVELOPMENT, V126, P1201
[6]   THE MOLECULAR-GENETICS OF EMBRYONIC PATTERN-FORMATION IN DROSOPHILA [J].
INGHAM, PW .
NATURE, 1988, 335 (6185) :25-34
[7]   Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins [J].
Kosman, D ;
Small, S ;
Reinitz, J .
DEVELOPMENT GENES AND EVOLUTION, 1998, 208 (05) :290-294
[8]  
Kosman D., 1997, Pacific Symposium on Biocomputing '98, P6
[9]  
KOZLOV K, 2000, UNPUB COMPUTATIONAL
[10]  
MERRILL PT, 1988, DEVELOPMENT, V104, P495